JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NBEAL2_chr3_46974666_47014701	0/0	c0021	8265	1	0	1	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0022	8296	1	0	0	1	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0023	8265	1	0	0	1	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0024	8265	1	1	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0025	8265	1	1	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0026	8265	1	1	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0027	8265	1	0	1	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0028	8265	1	1	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0029	8265	1	0	0	1	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0030	8265	1	1	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0031	8265	1	0	1	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0032	8265	1	1	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0033	8265	1	1	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0034	8265	1	0	0	0	0	1	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0035	8265	1	0	0	1	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0036	8283	1	0	0	1	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0037	8265	1	0	0	0	1	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0038	8265	1	0	1	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0039	8265	1	0	0	0	0	1	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0040	8265	1	0	1	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0041	8265	1	0	0	0	0	1	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0042	8265	1	0	0	0	0	1	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0043	8265	1	1	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0044	8265	1	1	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0045	8265	1	0	0	1	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0046	8265	1	0	0	0	0	1	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0047	8265	1	1	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0048	8265	1	0	0	0	0	1	copy fasta	NBEAL2	chr3	46974666	47014701
NBEA_chr13_34937270_35677736	1/1	c0001	8904	75	36	7	22	1	7	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0002	8904	7	1	0	6	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0003	8904	6	3	0	0	0	3	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0004	8904	5	2	0	2	0	1	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0005	8904	5	5	0	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0006	8904	2	2	0	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0007	8904	2	1	1	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0008	8904	2	2	0	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0009	8904	1	0	0	1	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0010	8904	1	1	0	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0011	8904	1	1	0	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0012	8904	1	0	0	1	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0013	8904	1	0	1	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0014	8904	1	1	0	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0015	8904	1	0	1	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0016	8904	1	0	0	0	0	1	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0017	8904	1	0	0	0	1	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0018	8904	1	1	0	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0019	8904	1	0	0	0	0	1	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0020	8904	1	0	0	0	0	1	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0021	8904	1	1	0	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0022	8904	1	1	0	0	0	0	copy fasta	NBEA	chr13	34937270	35677736