JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NBEA_chr13_34937270_35677736	0/0	c0023	8904	1	0	0	1	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0024	8904	1	1	0	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0025	8904	1	0	0	1	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	c0026	8904	1	1	0	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBL1_chr1_19639311_19663452	1/1	c0001	546	409	93	78	176	16	44	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	c0002	546	1	1	0	0	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	c0003	546	1	1	0	0	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	c0004	546	1	1	0	0	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBN_chr8_89928331_89989667	0/0	c0001	2265	147	12	31	81	8	15	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	1/1	c0002	2265	126	16	24	55	9	20	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	c0003	2265	86	36	9	35	1	5	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	c0004	2265	10	10	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	c0005	2265	4	4	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	c0006	2265	2	2	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	c0007	2265	2	2	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	c0008	2265	1	1	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	c0009	2265	1	0	0	1	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	c0010	2265	1	0	1	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	c0011	2265	1	0	0	1	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	c0012	2265	1	0	0	1	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	c0013	2265	1	0	0	1	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	c0014	2265	1	0	0	1	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	c0015	2265	1	1	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	c0016	2265	1	0	1	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	c0017	2265	1	1	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	c0018	2265	1	1	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	c0019	2265	1	0	0	1	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	c0020	2265	1	0	0	1	0	0	copy fasta	NBN	chr8	89928331	89989667
NBPF10_chr1_146059711_146149804	0/0	c0001	9924	8	0	1	7	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0002	11388	5	0	5	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0003	11388	5	0	0	5	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0004	10575	5	0	4	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0005	11388	4	0	3	0	1	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0006	11388	3	3	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0007	11388	3	1	2	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0008	10656	3	0	0	0	0	3	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0009	11388	3	0	0	3	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0010	11388	3	0	0	0	3	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0011	11388	2	2	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0012	11388	2	2	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0013	11388	2	0	2	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0014	11388	2	0	0	2	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0015	11388	2	0	0	2	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0016	11388	2	0	0	2	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0017	11388	2	0	0	2	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0018	11388	2	0	2	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0019	11388	2	0	2	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0020	11388	2	2	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0021	16841	2	0	2	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0022	10581	2	0	0	2	0	0	copy fasta	NBPF10	chr1	146059711	146149804