JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NBPF10_chr1_146059711_146149804	0/0	c0073	49186	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0074	49184	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0075	44482	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0076	11388	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0077	35016	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0078	25560	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0079	11388	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0080	39736	1	0	1	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0081	11388	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0082	11388	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0083	11388	1	0	1	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0084	11388	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0085	11388	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0086	11388	1	0	1	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0087	11388	1	0	0	0	1	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0088	10656	1	0	1	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0089	11388	1	0	1	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0090	11388	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0091	11388	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0092	11388	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0093	11388	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0094	11388	1	0	1	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0095	11388	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0096	11388	1	0	0	0	1	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0097	10155	1	0	0	0	0	1	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0098	10887	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0099	8685	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0100	10887	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0101	10887	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0102	11394	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0103	11388	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0104	11388	1	0	0	0	1	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0105	11388	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0106	11388	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0107	11388	1	0	1	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0108	11388	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0109	6264	1	0	1	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0110	11388	1	0	1	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0111	11388	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0112	9924	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0113	11388	1	0	0	0	1	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0114	35398	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0115	11388	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0116	11418	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0117	11388	1	0	1	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0118	11388	1	0	0	0	0	1	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0119	11388	1	0	1	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0120	11388	1	0	0	0	1	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0121	30651	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0122	11388	1	0	1	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804