JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NBPF10_chr1_146059711_146149804	0/0	c0223	10155	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0224	11394	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0225	10887	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0226	17666	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0227	17670	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0228	21576	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0229	10575	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	c0230	10581	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF11_chr1_148097151_148157281	1/0	c0001	2598	176	35	30	84	6	20	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0002	2602	78	5	15	55	1	2	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0003	2602	17	8	3	0	0	6	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0004	2602	13	13	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0005	2598	13	0	12	0	0	1	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0006	2602	10	0	0	10	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/1	c0007	2598	9	0	4	0	2	2	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0008	2602	7	0	2	5	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0009	2602	6	5	1	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0010	2642	5	0	0	5	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0011	2598	4	4	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0012	2598	4	0	0	4	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0013	2602	4	3	1	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0014	2602	3	3	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0015	2602	3	3	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0016	2598	2	0	2	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0017	2598	2	0	2	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0018	2598	2	2	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0019	2602	2	2	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0020	2598	2	0	0	2	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0021	2602	2	2	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0022	2602	2	0	0	2	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0023	2602	2	0	0	2	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0024	2598	1	0	1	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0025	2598	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0026	2598	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0027	2598	1	1	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0028	2598	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0029	2598	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0030	2598	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0031	2602	1	1	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0032	2598	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0033	2598	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0034	2602	1	1	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0035	2598	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0036	2598	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0037	2602	1	0	1	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0038	2602	1	0	0	0	0	1	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0039	2602	1	1	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0040	2602	1	1	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0041	2602	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	c0042	2598	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281