JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NBPF11_chr1_148097151_148157281	0/0	c0043	2598	1	0	0	0	1	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF12_chr1_146933324_147001198	0/0	c0001	4374	25	3	9	13	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0002	4383	14	0	5	6	0	3	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	1/1	c0003	4374	12	2	6	0	2	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0004	5914	6	1	2	2	0	1	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0005	5914	6	1	3	2	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0006	4383	6	0	5	1	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0007	4374	4	4	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0008	5914	3	3	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0009	4383	2	0	0	2	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0010	4374	2	0	1	0	1	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0011	3561	2	2	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0012	3561	2	2	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0013	3642	1	0	0	1	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0014	4374	1	0	0	1	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0015	4374	1	0	0	0	0	1	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0016	4374	1	0	1	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0017	4374	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0018	4374	1	0	0	0	0	1	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0019	4374	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0020	4374	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0021	3570	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0022	3642	1	0	0	1	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0023	5914	1	0	0	0	0	1	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0024	5914	1	0	0	0	0	1	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0025	7453	1	0	0	0	0	1	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0026	12211	1	0	1	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0027	10669	1	0	0	0	0	1	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0028	16958	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0029	5914	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0030	4374	1	0	0	1	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0031	9132	1	0	0	1	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0032	4383	1	0	1	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0033	10685	1	0	0	1	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0034	4383	1	0	1	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0035	4383	1	0	0	1	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0036	4383	1	0	0	1	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0037	4383	1	0	1	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0038	10687	1	0	1	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0039	16980	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0040	16980	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0041	4374	1	0	1	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0042	4374	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0043	4374	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0044	4374	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0045	2829	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0046	4374	1	0	0	0	1	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0047	4374	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0048	3636	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	c0049	9099	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198