JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NBPF12_chr1_146933324_147001198	0/0	c0050	9101	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF14_chr1_148526385_148601011	1/0	c0001	8967	12	1	3	0	4	3	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0002	8967	7	1	5	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0003	8967	4	0	0	4	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0004	8967	4	0	0	4	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0005	8967	4	0	4	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0006	8967	4	1	1	2	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0007	8967	4	0	0	4	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0008	8967	3	0	3	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0009	8967	3	1	1	0	0	1	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0010	8967	3	0	2	0	1	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0011	8967	3	0	2	0	1	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0012	8967	3	3	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0013	8967	2	2	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0014	10507	2	2	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0015	8967	2	0	0	0	2	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0016	8967	2	0	2	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0017	8967	2	0	0	2	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0018	8967	2	0	0	2	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0019	5307	2	2	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0020	8967	2	0	2	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0021	8967	2	2	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0022	8967	2	0	2	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0023	8967	2	0	0	2	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0024	8967	2	0	0	2	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0025	32507	2	0	2	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0026	8967	2	0	0	0	0	2	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0027	8967	2	2	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0028	8967	2	0	0	2	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0029	8967	2	0	0	2	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0030	8967	2	0	0	2	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0031	8967	2	0	0	0	0	2	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0032	34095	2	0	2	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0033	8967	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0034	8967	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0035	8967	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0036	8967	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0037	8967	1	0	0	0	1	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0038	8967	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0039	8967	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0040	8967	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0041	10002	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0042	10507	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0043	10507	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0044	34077	1	0	0	0	0	1	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0045	43511	1	0	0	0	0	1	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0046	10507	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0047	10509	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0048	8967	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0049	8967	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011