JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AP5M1_chr14_57263971_57303742	0/0	c0002	1473	56	32	12	11	0	1	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	c0003	1473	16	12	4	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	c0004	1473	11	11	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	c0005	1473	5	5	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	c0006	1473	3	0	3	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	c0007	1473	2	2	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	c0008	1473	2	2	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	c0009	1473	2	2	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	c0010	1473	1	0	0	1	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	c0011	1473	1	0	0	1	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	c0012	1473	1	1	0	0	0	0	copy fasta	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	c0013	1473	1	0	0	0	0	1	copy fasta	AP5M1	chr14	57263971	57303742
AP5S1_chr20_3815547_3833838	1/1	c0001	603	405	92	68	177	18	48	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	c0002	603	3	2	1	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	c0003	603	1	0	1	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	c0004	603	1	1	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	c0005	603	1	1	0	0	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	c0006	603	1	0	0	1	0	0	copy fasta	AP5S1	chr20	3815547	3833838
AP5Z1_chr7_4770623_4799397	1/1	c0001	2424	203	18	48	96	10	29	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0002	2424	36	31	2	0	2	1	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0003	2424	29	2	2	13	0	12	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0004	2412	19	17	2	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0005	2424	6	4	2	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0006	2424	6	6	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0007	2424	4	0	3	0	0	1	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0008	2424	3	3	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0009	2424	3	0	0	3	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0010	2424	2	2	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0011	2412	2	1	1	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0012	2424	2	2	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0013	2412	2	2	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0014	2424	2	2	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0015	2424	1	0	0	1	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0016	2424	1	0	0	0	0	1	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0017	2424	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0018	2412	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0019	2424	1	0	0	1	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0020	2424	1	0	0	1	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0021	2424	1	0	0	1	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0022	2424	1	0	0	1	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0023	2424	1	0	1	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0024	2424	1	0	0	0	0	1	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0025	2424	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0026	2424	1	0	0	1	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0027	2424	1	0	0	1	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0028	2424	1	0	1	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0029	2412	1	1	0	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0030	2424	1	0	0	1	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0031	2424	1	0	1	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0032	2424	1	0	0	1	0	0	copy fasta	AP5Z1	chr7	4770623	4799397