JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NBPF14_chr1_148526385_148601011	0/0	c0150	8967	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0151	10509	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0152	10507	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0153	8967	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0154	10507	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0155	10507	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0156	8967	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0157	10507	1	0	1	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0158	8967	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0159	29341	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	c0160	7728	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF15_chr1_144416390_144466669	1/1	c0001	2013	164	30	37	80	7	8	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0002	2013	145	26	27	69	6	17	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0003	2013	12	0	4	8	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0004	2013	9	9	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0005	2013	8	8	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0006	2013	6	0	2	0	3	1	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0007	2013	3	0	2	0	1	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0008	2013	3	3	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0009	2013	3	0	0	3	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0010	2013	3	0	0	0	0	3	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0011	2013	2	2	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0012	2013	2	0	2	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0013	2013	2	0	0	0	1	1	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0014	2013	2	1	0	0	0	1	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0015	2013	2	0	0	0	0	2	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0016	2013	1	0	0	0	0	1	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0017	2013	1	0	1	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0018	2013	1	0	0	0	0	1	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0019	2013	1	0	0	1	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0020	2013	1	0	0	1	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0021	2013	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0022	2013	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0023	2013	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0024	2013	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0025	2013	1	0	0	1	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0026	2013	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0027	2013	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0028	2013	1	0	1	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0029	2013	1	0	1	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0030	2013	1	0	0	0	0	1	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0031	2013	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0032	2013	1	0	0	0	0	1	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0033	2013	1	0	0	0	0	1	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0034	2013	1	0	0	0	0	1	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0035	2013	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0036	2013	1	0	1	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0037	2013	1	0	0	1	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0038	2013	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0039	2013	1	0	0	0	0	1	copy fasta	NBPF15	chr1	144416390	144466669