JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NBPF15_chr1_144416390_144466669	0/0	c0040	2013	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0041	2013	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0042	2013	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	c0043	2013	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF19_chr1_149470045_149561361	0/0	c0001	11532	7	1	4	1	1	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0002	11532	6	0	0	6	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0003	11532	4	0	0	4	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0004	10800	4	0	0	4	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0005	4212	3	0	0	3	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0006	11532	3	0	2	0	1	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0007	10800	3	0	3	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0008	11532	3	0	3	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0009	10038	3	0	0	3	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0010	11532	3	0	0	3	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0011	11532	2	0	0	2	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0012	11532	2	0	2	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0013	11532	2	0	0	2	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0014	11532	2	0	0	2	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0015	11532	2	0	0	0	0	2	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0016	11532	2	0	2	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0017	10068	2	0	0	0	0	2	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0018	11532	2	2	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0019	11532	2	2	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0020	10068	2	0	1	0	0	1	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	1/0	c0021	11532	2	0	0	0	0	1	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0022	10800	2	2	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0023	11532	2	2	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0024	11532	2	2	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0025	11532	2	2	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0026	11532	2	2	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0027	11532	2	2	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0028	11532	2	0	0	2	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0029	10800	2	0	0	2	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0030	10068	2	0	2	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/1	c0031	10800	2	0	0	0	0	1	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0032	11532	2	1	0	0	0	1	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0033	11532	2	2	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0034	10068	2	2	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0035	11532	2	2	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0036	11532	2	2	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0037	11532	2	0	2	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0038	11532	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0039	11532	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0040	11532	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0041	10800	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0042	10800	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0043	10068	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0044	11532	1	0	0	0	0	1	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0045	11532	1	0	0	0	0	1	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0046	35325	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361