JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NBPF19_chr1_149470045_149561361	0/0	c0197	10800	1	0	1	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0198	8604	1	0	0	0	0	1	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0199	11532	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0200	11532	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0201	11532	1	0	1	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0202	11532	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0203	25786	1	1	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0204	11532	1	0	0	0	1	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0205	11532	1	0	0	0	0	1	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0206	11532	1	0	1	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0207	11532	1	0	0	0	0	1	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0208	11532	1	1	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0209	11532	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0210	11532	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0211	25796	1	1	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0212	35277	1	1	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0213	16283	1	1	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0214	21046	1	1	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0215	11532	1	0	1	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0216	10068	1	0	1	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0217	11532	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0218	11532	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0219	11532	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	c0220	11532	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF20_chr1_145285005_145430603	1/0	c0001	16938	1	0	0	0	0	0	copy fasta	NBPF20	chr1	145285005	145430603
NBPF20_chr1_145285005_145430603	0/0	c0002	16656	1	0	1	0	0	0	copy fasta	NBPF20	chr1	145285005	145430603
NBPF20_chr1_145285005_145430603	0/1	c0003	14517	1	0	0	0	0	0	copy fasta	NBPF20	chr1	145285005	145430603
NBPF20_chr1_145285005_145430603	0/0	c0004	16938	1	0	0	1	0	0	copy fasta	NBPF20	chr1	145285005	145430603
NBPF20_chr1_145285005_145430603	0/0	c0005	18579	1	0	1	0	0	0	copy fasta	NBPF20	chr1	145285005	145430603
NBPF20_chr1_145285005_145430603	0/0	c0006	18297	1	0	0	1	0	0	copy fasta	NBPF20	chr1	145285005	145430603
NBPF3_chr1_21435137_21489900	0/0	c0001	1902	147	14	27	80	4	22	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	1/0	c0002	1902	91	22	14	47	3	4	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0003	1902	59	3	6	37	4	9	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0004	1893	18	10	8	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0005	1902	18	0	6	12	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0006	1902	9	7	2	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0007	1902	7	7	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0008	1902	5	3	0	0	2	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0009	1902	5	5	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0010	1902	5	0	2	0	1	2	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0011	1902	4	3	1	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0012	1902	4	4	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0013	1902	3	3	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0014	1902	1	0	1	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0015	1902	1	1	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0016	1902	1	0	0	1	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0017	1902	1	1	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0018	1893	1	1	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0019	1902	1	1	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0020	1902	1	0	1	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900