JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NBPF3_chr1_21435137_21489900	0/0	c0021	1902	1	0	0	1	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0022	1902	1	0	0	0	0	1	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0023	1902	1	1	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0024	1902	1	0	0	1	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/1	c0025	1902	1	0	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0026	1902	1	1	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0027	1902	1	0	0	1	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0028	1893	1	1	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0029	1902	1	1	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0030	1902	1	0	0	0	0	1	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0031	1902	1	0	0	0	0	1	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	c0032	1902	1	1	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF4_chr1_108217464_108249076	1/0	c0001	1917	69	20	14	22	5	7	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	c0002	1917	9	0	0	6	1	2	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	c0003	1917	9	6	1	0	1	1	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	c0004	1917	8	0	2	5	1	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/1	c0005	1917	5	0	3	1	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	c0006	1917	4	3	0	1	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	c0007	1917	4	0	0	4	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	c0008	1917	3	3	0	0	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	c0009	1917	2	2	0	0	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	c0010	1917	2	0	2	0	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	c0011	1917	2	0	0	2	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	c0012	1917	2	0	1	0	0	1	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	c0013	1917	2	0	0	1	0	1	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	c0014	1917	2	0	0	2	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	c0015	1917	1	1	0	0	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	c0016	1917	1	0	0	1	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	c0017	1917	1	0	0	1	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	c0018	1917	1	1	0	0	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	c0019	1917	1	0	0	0	0	1	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	c0020	1917	1	1	0	0	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	c0021	1917	1	0	0	1	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	c0022	1917	1	0	0	0	0	1	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	c0023	1917	1	1	0	0	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	c0024	1917	1	0	0	1	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	c0025	1917	1	0	1	0	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF6_chr1_108445343_108476920	1/0	c0001	1917	17	5	4	6	0	1	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	c0002	1917	10	4	1	2	1	2	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/1	c0003	1917	9	4	2	0	1	1	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	c0004	1917	8	7	1	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	c0005	1917	5	5	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	c0006	1917	4	0	2	1	0	1	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	c0007	1917	2	2	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	c0008	1917	1	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	c0009	1917	1	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	c0010	1917	1	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	c0011	1917	1	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	c0012	1917	1	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	c0013	1917	1	0	1	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920