JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NBPF6_chr1_108445343_108476920	0/0	c0014	1917	1	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	c0015	1917	1	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	c0016	1917	1	0	0	0	0	1	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	c0017	1917	1	0	0	1	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	c0018	1917	1	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	c0019	1906	1	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	c0020	1917	1	0	1	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF8_chr1_120410035_120474676	0/0	c0001	2144	56	0	12	36	3	5	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0002	2827	46	15	15	4	5	7	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0003	2710	28	10	1	15	0	2	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0004	2829	26	2	18	1	1	4	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	1/0	c0005	2829	25	0	1	15	0	8	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0006	2710	17	3	0	14	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0007	2708	11	2	5	3	0	1	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0008	2829	9	0	2	0	3	4	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0009	2144	8	0	0	8	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0010	2827	8	8	0	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0011	2827	6	6	0	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0012	2710	5	3	2	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0013	2144	4	4	0	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0014	2829	4	4	0	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/1	c0015	2829	2	0	1	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0016	2710	2	0	1	0	0	1	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0017	2016	2	0	0	0	0	2	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0018	2827	2	2	0	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0019	2708	2	2	0	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0020	2827	2	2	0	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0021	2708	2	2	0	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0022	2827	2	2	0	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0023	2710	1	0	0	1	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0024	2144	1	0	1	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0025	2144	1	0	1	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0026	2144	1	0	0	0	0	1	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0027	2144	1	0	0	1	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0028	2144	1	1	0	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0029	2144	1	0	0	1	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0030	2144	1	0	1	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0031	2829	1	0	0	0	1	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0032	2829	1	0	0	0	0	1	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0033	2829	1	0	0	1	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0034	2710	1	0	0	1	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0035	2829	1	0	0	0	0	1	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0036	2829	1	1	0	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0037	2829	1	0	0	1	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0038	2173	1	0	0	1	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0039	2827	1	0	0	0	1	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0040	2717	1	0	0	0	0	1	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0041	2827	1	0	1	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0042	2827	1	1	0	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0043	2708	1	0	0	1	0	0	copy fasta	NBPF8	chr1	120410035	120474676