JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NBPF8_chr1_120410035_120474676	0/0	c0044	2827	1	1	0	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	c0045	2827	1	1	0	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF9_chr1_149047186_149108551	1/0	c0001	3336	98	9	22	50	7	9	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0002	3336	76	5	4	59	1	7	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0003	2829	35	15	12	4	1	3	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0004	2829	21	6	6	9	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0005	2829	17	8	1	1	1	6	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0006	3336	13	12	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0007	3336	8	8	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0008	2829	7	1	3	0	0	3	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0009	3336	6	0	1	0	3	2	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0010	3336	5	4	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0011	3336	4	0	0	4	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0012	3336	4	0	0	4	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0013	3336	4	4	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0014	3336	3	0	2	0	0	1	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0015	2829	3	0	0	3	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0016	2829	3	0	2	0	1	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0017	3336	2	0	1	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0018	3336	2	0	0	0	0	2	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0019	3336	2	0	0	2	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0020	2829	2	2	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0021	2829	2	2	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0022	3336	2	0	0	2	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0023	3205	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0024	2829	1	0	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0025	3336	1	0	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0026	2829	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0027	2829	1	0	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0028	2829	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0029	3336	1	0	0	0	0	1	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0030	3336	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0031	2829	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0032	3336	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/1	c0033	2016	1	0	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0034	3336	1	0	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0035	2830	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0036	2829	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0037	2829	1	0	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0038	2830	1	0	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0039	2833	1	0	0	0	0	1	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0040	3336	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0041	3336	1	0	0	0	0	1	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0042	3336	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0043	3336	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0044	3336	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0045	3336	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0046	3336	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	c0047	2829	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBR1_chr17_43166214_43216688	1/0	c0001	2901	179	60	30	66	5	17	copy fasta	NBR1	chr17	43166214	43216688