JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AP5Z1_chr7_4770623_4799397	0/0	c0033	2424	1	0	0	0	0	1	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0034	2424	1	0	1	0	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	c0035	2424	1	0	0	1	0	0	copy fasta	AP5Z1	chr7	4770623	4799397
APAF1_chr12_98640290_98740433	1/1	c0001	3747	348	79	57	151	12	47	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	c0002	3747	3	3	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	c0003	3747	2	2	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	c0004	3747	2	2	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	c0005	3747	2	2	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	c0006	3747	2	0	0	2	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	c0007	3747	1	0	1	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	c0008	3747	1	0	0	1	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	c0009	3747	1	1	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	c0010	3747	1	0	0	1	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	c0011	3747	1	1	0	0	0	0	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	c0012	3747	1	0	0	0	0	1	copy fasta	APAF1	chr12	98640290	98740433
APAF1_chr12_98640290_98740433	0/0	c0013	3747	1	0	0	1	0	0	copy fasta	APAF1	chr12	98640290	98740433
APBA1_chr9_69422532_69677371	1/1	c0001	2514	156	55	29	38	6	26	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	c0002	2514	49	28	4	13	0	4	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	c0003	2514	1	0	0	1	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	c0004	2514	1	0	0	1	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	c0005	2514	1	0	1	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	c0006	2514	1	1	0	0	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA1_chr9_69422532_69677371	0/0	c0007	2514	1	0	0	1	0	0	copy fasta	APBA1	chr9	69422532	69677371
APBA2_chr15_28880974_29123315	1/1	c0001	2250	105	19	20	46	1	17	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	c0002	2250	66	44	7	9	1	5	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	c0003	2250	7	7	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	c0004	2250	4	3	1	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	c0005	2250	4	0	4	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	c0006	2250	4	4	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	c0007	2250	2	2	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	c0008	2250	2	0	0	2	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	c0009	2250	2	2	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	c0010	2250	1	1	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	c0011	2250	1	0	0	1	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	c0012	2250	1	1	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	c0013	2250	1	1	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	c0014	2250	1	1	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	c0015	2250	1	1	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	c0016	2250	1	1	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	c0017	2250	1	1	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA3_chr19_3745772_3766692	1/0	c0001	1728	155	35	24	72	4	19	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0002	1728	102	20	14	59	4	5	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0003	1728	65	2	15	30	6	12	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0004	1728	38	0	7	29	0	2	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/1	c0005	1728	27	1	14	0	4	7	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0006	1728	8	8	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0007	1728	8	8	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0008	1728	4	2	2	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0009	1728	3	2	1	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0010	1728	3	0	1	2	0	0	copy fasta	APBA3	chr19	3745772	3766692