JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NBR1_chr17_43166214_43216688	0/1	c0002	2901	116	18	23	52	5	17	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	c0003	2901	8	7	1	0	0	0	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	c0004	2901	3	3	0	0	0	0	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	c0005	2901	2	0	0	2	0	0	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	c0006	2901	1	0	0	1	0	0	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	c0007	2901	1	1	0	0	0	0	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	c0008	2901	1	0	1	0	0	0	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	c0009	2901	1	0	1	0	0	0	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	c0010	2901	1	0	0	1	0	0	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	c0011	2901	1	1	0	0	0	0	copy fasta	NBR1	chr17	43166214	43216688
NCALD_chr8_101681542_101795969	1/1	c0001	582	299	82	50	129	2	34	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	c0002	582	1	0	0	1	0	0	copy fasta	NCALD	chr8	101681542	101795969
NCAM1_chr11_112956420_113283436	0/0	c0001	2577	167	41	36	70	6	14	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	c0002	2577	57	7	13	25	6	6	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	c0003	2577	3	3	0	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	c0004	2577	2	1	0	0	0	1	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	c0005	2577	2	2	0	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	c0006	2577	2	0	0	2	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	c0007	2577	1	0	1	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	c0008	2577	1	1	0	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	c0009	2577	1	1	0	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	c0010	2577	1	1	0	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	c0011	2577	1	1	0	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	c0012	2577	1	1	0	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	c0013	2577	1	0	0	0	0	1	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	c0014	2577	1	0	0	1	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	c0015	2577	1	1	0	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM2_chr21_20993409_21548329	0/0	c0001	2514	53	25	10	9	0	9	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	c0002	2514	35	12	7	12	2	2	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	c0003	2514	14	12	1	1	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	c0004	2514	13	8	1	1	0	3	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	c0005	2514	4	2	2	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	c0006	2514	3	3	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	c0007	2514	3	3	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	c0008	2514	1	1	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	c0009	2514	1	0	1	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	c0010	2514	1	1	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	c0011	2514	1	1	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	c0012	2514	1	1	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	c0013	2514	1	1	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	c0014	2514	1	0	0	1	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAN_chr19_19206958_19257233	1/0	c0001	3966	197	47	50	63	7	29	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	c0002	3966	38	19	3	7	2	7	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/1	c0003	3966	29	0	8	18	0	2	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	c0004	3966	12	0	1	6	1	4	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	c0005	3966	11	11	0	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	c0006	3966	10	5	0	5	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	c0007	3966	5	5	0	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	c0008	3966	3	0	0	3	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	c0009	3966	1	0	1	0	0	0	copy fasta	NCAN	chr19	19206958	19257233