JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NCAN_chr19_19206958_19257233	0/0	c0010	3966	1	1	0	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	c0011	3966	1	0	0	1	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	c0012	3966	1	0	0	1	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	c0013	3966	1	0	0	1	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	c0014	3966	1	0	1	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	c0015	3966	1	0	1	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	c0016	3966	1	1	0	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	c0017	3966	1	1	0	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	c0018	3966	1	0	0	1	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	c0019	3966	1	0	1	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	c0020	3966	1	1	0	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	c0021	3966	1	1	0	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAPD2_chr12_6489102_6536955	0/0	c0001	4206	123	41	29	38	3	12	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	1/0	c0002	4206	81	2	13	50	6	9	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0003	4206	70	3	6	51	3	7	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0004	4206	58	14	8	28	0	8	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0005	4206	17	1	5	2	3	6	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0006	4206	12	0	0	10	0	2	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0007	4206	12	10	2	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0008	4206	8	0	8	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0009	4206	7	0	1	6	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0010	4206	6	0	0	5	0	1	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0011	4206	4	4	0	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0012	4206	3	3	0	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0013	4206	3	3	0	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0014	4206	3	3	0	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0015	4206	2	1	1	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0016	4206	2	2	0	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0017	4206	2	0	0	2	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0018	4206	1	0	0	1	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0019	4206	1	0	1	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0020	4206	1	0	0	1	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0021	4206	1	0	0	1	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/1	c0022	4206	1	0	0	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0023	4206	1	0	0	0	1	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0024	4206	1	0	0	1	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0025	4206	1	0	0	1	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0026	4206	1	0	0	0	0	1	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0027	4206	1	1	0	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0028	4206	1	1	0	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0029	4206	1	0	0	1	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0030	4206	1	0	0	0	0	1	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0031	4206	1	1	0	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0032	4206	1	0	0	0	0	1	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0033	4206	1	0	1	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0034	4206	1	1	0	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0035	4206	1	0	1	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	c0036	4206	1	1	0	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD3_chr11_134145113_134228967	0/1	c0001	4497	162	41	29	74	3	14	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	1/0	c0002	4497	150	20	36	70	6	17	copy fasta	NCAPD3	chr11	134145113	134228967