JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NCAPD3_chr11_134145113_134228967	0/0	c0003	4497	13	12	1	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0004	4497	5	5	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0005	4497	5	0	0	2	1	2	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0006	4497	4	0	0	4	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0007	4497	3	3	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0008	4497	3	0	0	3	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0009	4497	3	3	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0010	4497	2	2	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0011	4497	2	0	2	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0012	4497	2	2	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0013	4497	1	0	0	1	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0014	4497	1	1	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0015	4497	1	0	0	1	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0016	4497	1	0	1	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0017	4497	1	1	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0018	4497	1	0	1	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0019	4497	1	0	0	1	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0020	4497	1	1	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0021	4497	1	1	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0022	4497	1	0	0	1	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0023	4497	1	1	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0024	4497	1	1	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0025	4497	1	1	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0026	4497	1	0	0	1	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0027	4497	1	1	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	c0028	4497	1	0	0	0	0	1	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPG2_chr7_158626169_158709804	1/1	c0001	3432	310	63	60	135	12	38	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	c0002	3432	18	0	0	18	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	c0003	3432	9	8	1	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	c0004	3432	8	0	2	4	0	2	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	c0005	3432	8	8	0	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	c0006	3432	4	4	0	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	c0007	3432	3	3	0	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	c0008	3432	2	0	2	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	c0009	3432	2	2	0	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	c0010	3432	1	0	0	1	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	c0011	3432	1	0	0	1	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	c0012	3432	1	0	0	1	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	c0013	3432	1	1	0	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	c0014	3432	1	1	0	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	c0015	3432	1	1	0	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	c0016	3432	1	0	1	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	c0017	3432	1	0	1	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	c0018	3432	1	0	1	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	c0019	3432	1	0	0	1	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	c0020	3432	1	0	1	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	c0021	3432	1	1	0	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	c0022	3432	1	0	1	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	c0023	3432	1	0	0	1	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG_chr4_17805979_17849865	1/0	c0001	3048	178	64	32	67	3	11	copy fasta	NCAPG	chr4	17805979	17849865