JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NCAPG_chr4_17805979_17849865	0/1	c0002	3048	109	15	23	52	3	15	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	c0003	3048	46	3	14	18	2	9	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	c0004	3048	28	5	1	15	0	7	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	c0005	3048	20	0	0	20	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	c0006	3048	4	0	0	4	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	c0007	3048	3	3	0	0	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	c0008	3048	2	0	0	0	0	2	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	c0009	3048	1	1	0	0	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	c0010	3048	1	0	1	0	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	c0011	3048	1	0	1	0	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	c0012	3048	1	1	0	0	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	c0013	3048	1	1	0	0	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	c0014	3048	1	1	0	0	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPH2_chr22_50503224_50529780	1/0	c0001	1818	340	64	73	145	16	41	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	c0002	1818	19	17	2	0	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	c0003	1818	4	4	0	0	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	c0004	1818	3	2	1	0	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	c0005	1818	2	1	1	0	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	c0006	1818	2	2	0	0	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	c0007	1818	2	2	0	0	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	c0008	1818	1	0	1	0	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	c0009	1818	1	1	0	0	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	c0010	1818	1	0	0	1	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	c0011	1818	1	0	0	1	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	c0012	1818	1	0	0	1	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/1	c0013	1818	1	0	0	0	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	c0014	1818	1	0	0	1	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	c0015	1818	1	0	0	1	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	c0016	1818	1	0	0	0	0	1	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	c0017	1818	1	1	0	0	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	c0018	1818	1	0	1	0	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	c0019	1818	1	0	1	0	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH_chr2_96330766_96382091	1/1	c0001	2226	203	61	35	90	7	8	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	c0002	2226	101	2	20	54	3	22	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	c0003	2226	39	22	5	10	0	2	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	c0004	2226	2	0	0	2	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	c0005	2226	2	2	0	0	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	c0006	2226	1	0	0	1	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	c0007	2226	1	1	0	0	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	c0008	2226	1	0	0	1	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	c0009	2226	1	0	0	1	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	c0010	2226	1	0	1	0	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	c0011	2226	1	0	1	0	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	c0012	2226	1	0	0	1	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	c0013	2226	1	0	0	1	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	c0014	2226	1	0	0	1	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCBP1_chr9_97628821_97678748	1/1	c0001	2373	268	36	45	134	13	38	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	c0002	2373	58	26	12	19	0	1	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	c0003	2373	15	14	1	0	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	c0004	2373	6	6	0	0	0	0	copy fasta	NCBP1	chr9	97628821	97678748