JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NCBP1_chr9_97628821_97678748	0/0	c0005	2373	6	4	2	0	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	c0006	2373	3	0	2	0	1	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	c0007	2373	2	1	1	0	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	c0008	2373	1	1	0	0	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	c0009	2373	1	1	0	0	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	c0010	2373	1	1	0	0	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	c0011	2373	1	0	0	0	0	1	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	c0012	2373	1	0	1	0	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	c0013	2373	1	0	0	1	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP2AS2_chr3_196937674_196948543	1/1	c0001	300	429	92	80	197	18	40	copy fasta	NCBP2AS2	chr3	196937674	196948543
NCBP2AS2_chr3_196937674_196948543	0/0	c0002	300	1	0	0	1	0	0	copy fasta	NCBP2AS2	chr3	196937674	196948543
NCBP2L_chrX_107772733_107800829	1/1	c0001	462	201	17	37	114	9	22	copy fasta	NCBP2L	chrX	107772733	107800829
NCBP2L_chrX_107772733_107800829	0/0	c0002	462	90	46	10	24	4	6	copy fasta	NCBP2L	chrX	107772733	107800829
NCBP2L_chrX_107772733_107800829	0/0	c0003	462	11	10	1	0	0	0	copy fasta	NCBP2L	chrX	107772733	107800829
NCBP2L_chrX_107772733_107800829	0/0	c0004	461	1	1	0	0	0	0	copy fasta	NCBP2L	chrX	107772733	107800829
NCBP2_chr3_196930406_196947528	1/1	c0001	471	418	94	76	187	18	41	copy fasta	NCBP2	chr3	196930406	196947528
NCBP2_chr3_196930406_196947528	0/0	c0002	471	1	0	0	0	0	1	copy fasta	NCBP2	chr3	196930406	196947528
NCBP2_chr3_196930406_196947528	0/0	c0003	471	1	0	0	1	0	0	copy fasta	NCBP2	chr3	196930406	196947528
NCBP3_chr17_3797158_3851246	1/1	c0001	1863	300	66	62	121	12	37	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	c0002	1863	35	6	0	28	0	1	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	c0003	1863	11	10	1	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	c0004	1863	8	1	7	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	c0005	1863	7	7	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	c0006	1863	5	0	3	0	2	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	c0007	1863	2	0	2	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	c0008	1863	1	0	0	1	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	c0009	1863	1	0	1	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCCRP1_chr19_39191964_39206884	1/1	c0001	828	375	88	76	153	14	42	copy fasta	NCCRP1	chr19	39191964	39206884
NCCRP1_chr19_39191964_39206884	0/0	c0002	828	2	0	0	0	2	0	copy fasta	NCCRP1	chr19	39191964	39206884
NCCRP1_chr19_39191964_39206884	0/0	c0003	828	1	0	1	0	0	0	copy fasta	NCCRP1	chr19	39191964	39206884
NCCRP1_chr19_39191964_39206884	0/0	c0004	828	1	0	0	1	0	0	copy fasta	NCCRP1	chr19	39191964	39206884
NCCRP1_chr19_39191964_39206884	0/0	c0005	828	1	0	1	0	0	0	copy fasta	NCCRP1	chr19	39191964	39206884
NCDN_chr1_35552799_35571779	1/1	c0001	2190	380	95	61	168	15	39	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	c0002	2190	3	0	1	0	1	1	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	c0003	2190	2	0	0	2	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	c0004	2190	2	0	0	0	0	2	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	c0005	2190	1	0	0	1	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	c0006	2190	1	1	0	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	c0007	2190	1	0	0	1	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCEH1_chr3_172625249_172716067	1/1	c0001	1227	291	69	49	110	17	44	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	c0002	1227	40	18	3	14	1	4	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	c0003	1227	1	1	0	0	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCF1_chr7_74769011_74794315	1/1	c0001	1173	158	27	31	64	7	27	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	c0002	1173	44	12	14	16	0	2	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	c0003	1173	40	17	7	12	3	1	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	c0004	1173	32	1	0	28	2	1	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	c0005	1173	21	17	3	0	0	1	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	c0006	1173	12	3	2	7	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	c0007	1173	3	0	0	3	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	c0008	1173	3	0	0	3	0	0	copy fasta	NCF1	chr7	74769011	74794315