JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NCF1_chr7_74769011_74794315	0/0	c0009	1173	3	3	0	0	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	c0010	1173	2	2	0	0	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	c0011	1173	1	0	0	1	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	c0012	1173	1	0	1	0	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	c0013	1173	1	0	0	1	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	c0014	1173	1	0	1	0	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	c0015	1173	1	0	0	1	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	c0016	1173	1	0	0	1	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	c0017	1173	1	1	0	0	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	c0018	1173	1	0	0	1	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	c0019	1173	1	1	0	0	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	c0020	1173	1	1	0	0	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	c0021	1173	1	0	1	0	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	0/0	c0022	1173	1	1	0	0	0	0	copy fasta	NCF1	chr7	74769011	74794315
NCF2_chr1_183550562_183595459	1/1	c0001	1581	186	63	26	63	11	21	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	c0002	1581	181	24	46	91	4	16	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	c0003	1581	10	1	2	7	0	0	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	c0004	1581	9	0	0	9	0	0	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	c0005	1581	7	7	0	0	0	0	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	c0006	1581	3	0	1	0	2	0	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	c0007	1581	3	0	0	0	0	3	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	c0008	1581	2	0	1	0	1	0	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	c0009	1581	1	1	0	0	0	0	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	c0010	1581	1	1	0	0	0	0	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	c0011	1581	1	1	0	0	0	0	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	c0012	1581	1	0	0	0	0	1	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	c0013	1581	1	0	0	0	0	1	copy fasta	NCF2	chr1	183550562	183595459
NCF4_chr22_36856006_36883015	1/1	c0001	1020	333	33	67	171	16	44	copy fasta	NCF4	chr22	36856006	36883015
NCF4_chr22_36856006_36883015	0/0	c0002	1020	36	21	9	6	0	0	copy fasta	NCF4	chr22	36856006	36883015
NCF4_chr22_36856006_36883015	0/0	c0003	1020	13	10	1	0	1	1	copy fasta	NCF4	chr22	36856006	36883015
NCF4_chr22_36856006_36883015	0/0	c0004	1020	12	2	0	10	0	0	copy fasta	NCF4	chr22	36856006	36883015
NCF4_chr22_36856006_36883015	0/0	c0005	1020	12	3	3	1	1	4	copy fasta	NCF4	chr22	36856006	36883015
NCF4_chr22_36856006_36883015	0/0	c0006	1020	10	10	0	0	0	0	copy fasta	NCF4	chr22	36856006	36883015
NCF4_chr22_36856006_36883015	0/0	c0007	1020	8	8	0	0	0	0	copy fasta	NCF4	chr22	36856006	36883015
NCF4_chr22_36856006_36883015	0/0	c0008	1020	3	3	0	0	0	0	copy fasta	NCF4	chr22	36856006	36883015
NCF4_chr22_36856006_36883015	0/0	c0009	1020	2	0	1	1	0	0	copy fasta	NCF4	chr22	36856006	36883015
NCF4_chr22_36856006_36883015	0/0	c0010	1020	1	1	0	0	0	0	copy fasta	NCF4	chr22	36856006	36883015
NCF4_chr22_36856006_36883015	0/0	c0011	1020	1	0	0	1	0	0	copy fasta	NCF4	chr22	36856006	36883015
NCF4_chr22_36856006_36883015	0/0	c0012	1020	1	0	1	0	0	0	copy fasta	NCF4	chr22	36856006	36883015
NCF4_chr22_36856006_36883015	0/0	c0013	1020	1	0	0	0	0	1	copy fasta	NCF4	chr22	36856006	36883015
NCF4_chr22_36856006_36883015	0/0	c0014	1020	1	1	0	0	0	0	copy fasta	NCF4	chr22	36856006	36883015
NCK1_chr3_136857208_136956606	1/1	c0001	1134	219	59	41	70	11	36	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	0/0	c0002	1134	7	7	0	0	0	0	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	0/0	c0003	1134	3	0	3	0	0	0	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	0/0	c0004	1134	1	0	0	1	0	0	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	0/0	c0005	1134	1	0	0	1	0	0	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	0/0	c0006	1134	1	0	0	0	1	0	copy fasta	NCK1	chr3	136857208	136956606
NCK2_chr2_105739912_105899272	1/0	c0001	1143	326	70	60	147	12	36	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	c0002	1143	3	0	0	3	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	c0003	1143	1	0	0	1	0	0	copy fasta	NCK2	chr2	105739912	105899272