JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NCK2_chr2_105739912_105899272	0/0	c0004	1143	1	0	0	1	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	c0005	1143	1	1	0	0	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	c0006	1143	1	1	0	0	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/1	c0007	1143	1	0	0	0	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCKAP1L_chr12_54492752_54553243	0/1	c0001	3384	240	68	44	92	10	25	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	1/0	c0002	3384	53	20	12	13	3	4	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	c0003	3384	28	6	5	13	0	4	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	c0004	3384	14	0	4	10	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	c0005	3384	2	0	1	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	c0006	3384	1	1	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	c0007	3384	1	0	1	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	c0008	3384	1	1	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	c0009	3384	1	1	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	c0010	3384	1	0	0	0	0	1	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	c0011	3384	1	0	1	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	c0012	3384	1	1	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	c0013	3384	1	0	0	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	c0014	3384	1	1	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	c0015	3384	1	0	0	0	1	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	c0016	3384	1	0	0	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	c0017	3384	1	1	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	c0018	3384	1	0	0	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1_chr2_182904115_183043457	0/1	c0001	3387	124	21	19	66	2	15	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	1/0	c0002	3387	45	34	4	1	2	3	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	c0003	3387	31	17	2	9	0	3	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	c0004	3387	8	4	4	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	c0005	3387	3	3	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	c0006	3387	1	0	0	1	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	c0007	3387	1	0	0	0	0	1	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	c0008	3387	1	0	1	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	c0009	3387	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	c0010	3387	1	0	0	1	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	c0011	3387	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	c0012	3387	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP5L_chr12_49786152_49833413	0/0	c0001	4005	104	35	19	30	9	11	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0002	4005	92	1	14	71	0	6	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	1/1	c0003	4005	86	17	23	28	5	11	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0004	4005	35	12	1	21	0	1	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0005	4005	12	8	2	0	0	2	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0006	4005	10	10	0	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0007	4005	2	0	0	2	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0008	4005	2	2	0	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0009	4005	1	0	0	1	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0010	4005	1	0	0	1	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0011	4005	1	0	1	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0012	4005	1	1	0	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0013	4005	1	0	0	0	0	1	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0014	4005	1	0	0	0	0	1	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0015	4005	1	0	1	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0016	4005	1	0	0	1	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413