JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NCKAP5L_chr12_49786152_49833413	0/0	c0017	4005	1	0	1	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0018	4005	1	0	1	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0019	4005	1	0	1	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0020	4005	1	0	0	0	0	1	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0021	4005	1	1	0	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0022	4005	1	1	0	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0023	4005	1	0	0	0	0	1	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0024	4005	1	1	0	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0025	4005	1	1	0	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0026	4005	1	1	0	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0027	4005	1	1	0	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0028	4005	1	0	0	1	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0029	4005	1	0	1	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0030	4005	1	0	0	0	0	1	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	c0031	4005	1	0	1	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5_chr2_132666788_133573463	0/0	c0001	5730	10	8	1	1	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0002	5730	7	5	0	2	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0003	5730	7	6	1	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0004	5730	6	1	1	4	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0005	5730	5	3	1	1	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0006	5730	4	0	2	2	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0007	5730	4	3	1	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0008	5730	4	4	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0009	5730	2	2	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0010	5730	2	2	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0011	5730	1	0	1	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0012	5730	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0013	5730	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0014	5730	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0015	5730	1	0	0	1	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0016	5730	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0017	5730	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0018	5730	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0019	5730	1	0	1	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0020	5730	1	0	0	1	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0021	5730	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0022	5730	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0023	5730	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0024	5730	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0025	5730	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0026	5730	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0027	5730	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0028	5730	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	c0029	5730	1	0	1	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKIPSD_chr3_48668844_48690915	1/1	c0001	2169	291	81	54	105	13	36	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	c0002	2169	5	5	0	0	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	c0003	2169	2	0	0	0	2	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	c0004	2169	2	2	0	0	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	c0005	2169	1	1	0	0	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	c0006	2169	1	0	1	0	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915