JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NCKIPSD_chr3_48668844_48690915	0/0	c0007	2169	1	0	0	1	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	c0008	2169	1	0	0	0	1	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	c0009	2169	1	1	0	0	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	c0010	2169	1	0	1	0	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	c0011	2169	1	0	0	1	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	c0012	2169	1	0	0	1	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	c0013	2169	1	0	0	1	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	c0014	2169	1	0	0	1	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCLN_chr19_3180930_3214575	0/0	c0001	1692	185	41	33	80	9	22	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	1/0	c0002	1692	84	13	28	23	7	12	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/1	c0003	1692	60	0	4	47	1	7	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0004	1692	18	18	0	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0005	1692	12	1	2	6	0	3	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0006	1692	11	10	1	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0007	1692	10	1	5	4	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0008	1692	3	0	0	3	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0009	1692	3	0	0	3	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0010	1692	3	3	0	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0011	1692	2	0	0	2	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0012	1693	2	0	0	2	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0013	1692	2	2	0	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0014	1693	2	1	0	1	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0015	1692	1	0	0	1	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0016	1692	1	1	0	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0017	1692	1	0	0	1	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0018	1692	1	0	1	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0019	1692	1	1	0	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0020	1692	1	0	0	1	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0021	1692	1	0	0	0	1	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0022	1692	1	1	0	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0023	1692	1	0	0	1	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0024	1692	1	1	0	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0025	1692	1	1	0	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0026	1692	1	1	0	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	c0027	1692	1	0	0	1	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCL_chr2_231448531_231469484	1/1	c0001	2133	207	36	52	82	13	22	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	c0002	2133	152	36	10	91	0	15	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	c0003	2130	67	0	12	42	3	10	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	c0004	2133	4	4	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	c0005	2133	4	4	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	c0006	2130	3	0	0	3	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	c0007	2130	3	2	1	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	c0008	2133	3	3	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	c0009	2133	3	2	1	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	c0010	2133	3	0	0	3	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	c0011	2130	2	2	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	c0012	2130	2	2	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	c0013	2133	2	2	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	c0014	2133	1	1	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	c0015	2133	1	1	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484