JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NCL_chr2_231448531_231469484	0/0	c0016	2133	1	1	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	c0017	2118	1	0	0	1	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	c0018	2130	1	0	0	1	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	c0019	2133	1	0	0	1	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	c0020	2133	1	0	0	0	0	1	copy fasta	NCL	chr2	231448531	231469484
NCMAP_chr1_24551087_24614328	1/1	c0001	309	378	72	72	170	18	44	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	c0002	309	23	21	2	0	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	c0003	309	1	1	0	0	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCOA1_chr2_24486254_24775702	0/1	c0001	4326	197	24	37	110	8	17	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	c0002	4326	58	16	5	30	2	5	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	1/0	c0003	4326	37	17	9	2	3	5	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	c0004	4326	10	6	4	0	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	c0005	4326	2	2	0	0	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	c0006	4326	2	2	0	0	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	c0007	4326	1	0	1	0	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	c0008	4326	1	1	0	0	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	c0009	4368	1	0	0	1	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	c0010	4326	1	0	1	0	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	c0011	4326	1	0	0	1	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	c0012	4326	1	0	0	0	1	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	c0013	4326	1	0	1	0	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	c0014	4326	1	0	0	0	0	1	copy fasta	NCOA1	chr2	24486254	24775702
NCOA2_chr8_70104782_70408808	1/1	c0001	4395	241	50	34	124	4	27	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	c0002	4395	38	2	4	27	0	5	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	c0003	4395	18	18	0	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	c0004	4395	6	5	1	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	c0005	4395	4	4	0	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	c0006	4395	3	3	0	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	c0007	4395	1	0	0	0	0	1	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	c0008	4395	1	1	0	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	c0009	4395	1	0	0	1	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	c0010	4395	1	1	0	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	c0011	4395	1	0	1	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	c0012	4395	1	1	0	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	c0013	4395	1	0	0	1	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	c0014	4395	1	0	1	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	c0015	4395	1	1	0	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	c0016	4395	1	0	0	0	0	1	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	c0017	4395	1	0	0	1	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	c0018	4395	1	0	1	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA3_chr20_47496887_47661872	1/0	c0001	4275	124	26	25	49	6	17	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0002	4272	59	14	14	24	4	3	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0003	4275	25	11	1	13	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/1	c0004	4266	24	1	4	8	4	6	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0005	4275	17	1	2	8	0	6	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0006	4272	10	0	5	5	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0007	4272	9	8	1	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0008	4275	9	4	3	0	2	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0009	4278	6	0	3	0	0	3	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0010	4272	5	4	1	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872