JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
APBA3_chr19_3745772_3766692	0/0	c0011	1728	3	0	0	3	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0012	1728	2	2	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0013	1728	2	2	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0014	1728	2	2	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0015	1728	2	2	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0016	1728	2	0	0	0	0	2	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0017	1728	2	2	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0018	1728	1	0	0	1	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0019	1728	1	1	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0020	1728	1	1	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0021	1728	1	1	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0022	1728	1	1	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0023	1728	1	1	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0024	1728	1	0	0	1	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0025	1728	1	0	0	1	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0026	1728	1	0	0	1	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0027	1728	1	0	0	1	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0028	1728	1	0	1	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0029	1728	1	1	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0030	1728	1	0	1	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0031	1728	1	0	0	0	0	1	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0032	1728	1	0	1	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0033	1728	1	0	0	1	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0034	1728	1	0	0	1	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0035	1728	1	0	0	1	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0036	1728	1	0	1	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0037	1728	1	0	0	1	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0038	1728	1	1	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	c0039	1728	1	1	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBB1IP_chr10_26433341_26572803	1/1	c0001	2001	322	63	62	153	8	34	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	c0002	2001	10	10	0	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	c0003	2001	5	4	1	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	c0004	2001	3	3	0	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	c0005	1998	3	3	0	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	c0006	2001	3	3	0	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	c0007	2001	2	2	0	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	c0008	2001	2	0	2	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	c0009	2001	2	2	0	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	c0010	2013	1	1	0	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	c0011	2001	1	0	1	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	c0012	2001	1	0	0	1	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	c0013	1998	1	1	0	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	c0014	2001	1	1	0	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	c0015	2001	1	1	0	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1_chr11_6390125_6424094	1/1	c0001	2133	376	78	78	152	17	49	copy fasta	APBB1	chr11	6390125	6424094
APBB1_chr11_6390125_6424094	0/0	c0002	2133	11	10	1	0	0	0	copy fasta	APBB1	chr11	6390125	6424094
APBB1_chr11_6390125_6424094	0/0	c0003	2133	6	0	6	0	0	0	copy fasta	APBB1	chr11	6390125	6424094
APBB1_chr11_6390125_6424094	0/0	c0004	2133	5	0	0	5	0	0	copy fasta	APBB1	chr11	6390125	6424094
APBB1_chr11_6390125_6424094	0/0	c0005	2133	4	0	0	4	0	0	copy fasta	APBB1	chr11	6390125	6424094
APBB1_chr11_6390125_6424094	0/0	c0006	2133	4	0	0	3	0	1	copy fasta	APBB1	chr11	6390125	6424094