JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NCOA3_chr20_47496887_47661872	0/0	c0011	4266	4	0	0	4	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0012	4278	3	2	0	1	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0013	4275	2	2	0	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0014	4281	2	0	0	2	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0015	4275	2	2	0	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0016	4275	2	1	1	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0017	4281	2	2	0	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0018	4275	1	0	0	1	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0019	4275	1	0	0	1	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0020	4278	1	0	0	0	0	1	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0021	4266	1	0	0	1	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0022	4272	1	0	0	1	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0023	4275	1	1	0	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0024	4266	1	0	1	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0025	4272	1	1	0	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0026	4278	1	1	0	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0027	4275	1	0	1	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	c0028	4275	1	1	0	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA4_chr10_46000088_46035623	1/0	c0001	1845	337	76	64	151	11	34	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/1	c0002	1845	53	9	2	31	4	6	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	c0003	1845	5	0	0	5	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	c0004	1845	4	0	1	2	0	1	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	c0005	1845	3	3	0	0	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	c0006	1845	1	0	0	0	1	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	c0007	1845	1	0	1	0	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	c0008	1845	1	0	0	0	0	1	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	c0009	1845	1	1	0	0	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	c0010	1845	1	1	0	0	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	c0011	1845	1	0	0	1	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	c0012	1845	1	0	1	0	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	c0013	1863	1	0	0	1	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	c0014	1845	1	0	0	1	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	c0015	1845	1	0	1	0	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA5_chr20_46055991_46094962	1/1	c0001	1740	193	37	31	80	13	30	copy fasta	NCOA5	chr20	46055991	46094962
NCOA5_chr20_46055991_46094962	0/0	c0002	1740	147	23	27	78	5	14	copy fasta	NCOA5	chr20	46055991	46094962
NCOA5_chr20_46055991_46094962	0/0	c0003	1740	28	24	4	0	0	0	copy fasta	NCOA5	chr20	46055991	46094962
NCOA5_chr20_46055991_46094962	0/0	c0004	1740	7	0	0	7	0	0	copy fasta	NCOA5	chr20	46055991	46094962
NCOA5_chr20_46055991_46094962	0/0	c0005	1740	5	5	0	0	0	0	copy fasta	NCOA5	chr20	46055991	46094962
NCOA5_chr20_46055991_46094962	0/0	c0006	1740	1	0	0	1	0	0	copy fasta	NCOA5	chr20	46055991	46094962
NCOA5_chr20_46055991_46094962	0/0	c0007	1740	1	1	0	0	0	0	copy fasta	NCOA5	chr20	46055991	46094962
NCOA6_chr20_34709774_34830651	0/1	c0001	6192	189	37	42	76	10	23	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	1/0	c0002	6192	61	17	5	26	3	9	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	c0003	6192	17	15	2	0	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	c0004	6192	7	3	4	0	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	c0005	6192	2	0	2	0	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	c0006	6192	2	0	0	2	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	c0007	6192	1	0	0	1	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	c0008	6186	1	0	0	1	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	c0009	6192	1	0	0	0	1	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	c0010	6192	1	0	1	0	0	0	copy fasta	NCOA6	chr20	34709774	34830651