JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NCOA6_chr20_34709774_34830651	0/0	c0011	6192	1	0	0	1	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	c0012	6192	1	0	0	1	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	c0013	6192	1	1	0	0	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	c0014	6192	1	1	0	0	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	c0015	6192	1	1	0	0	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	c0016	6192	1	0	0	1	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	c0017	6192	1	0	0	1	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	c0018	6192	1	1	0	0	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA7_chr6_125785960_125937034	0/0	c0001	2829	124	23	28	54	7	12	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	1/1	c0002	2829	83	17	15	30	7	12	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	c0003	2829	47	19	3	19	2	4	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	c0004	2829	4	4	0	0	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	c0005	2829	2	0	0	2	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	c0006	2829	2	0	2	0	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	c0007	2829	1	0	0	0	0	1	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	c0008	2829	1	1	0	0	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	c0009	2829	1	1	0	0	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	c0010	2829	1	1	0	0	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	c0011	2829	1	1	0	0	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	c0012	2829	1	0	0	1	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	c0013	2829	1	1	0	0	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	c0014	2829	1	0	0	0	0	1	copy fasta	NCOA7	chr6	125785960	125937034
NCOR1_chr17_16024157_16220534	1/1	c0001	7323	250	75	55	85	10	23	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	c0002	7323	7	6	1	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	c0003	7323	6	0	0	6	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	c0004	7323	2	2	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	c0005	7323	2	0	2	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	c0006	7323	2	2	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	c0007	7323	1	1	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	c0008	7323	1	1	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	c0009	7323	1	1	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	c0010	7323	1	1	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	c0011	7323	1	1	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	c0012	7323	1	0	1	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	c0013	7323	1	0	0	1	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	c0014	7323	1	0	0	0	0	1	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	c0015	7323	1	0	0	1	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	c0016	7323	1	0	1	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	c0017	7323	1	1	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	c0018	7323	1	0	0	1	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	c0019	7323	1	1	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR2_chr12_124319415_124572612	0/0	c0001	7554	7	3	4	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0002	7560	6	6	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0003	7557	6	0	0	6	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	1/0	c0004	7545	6	5	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0005	7557	5	0	4	0	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0006	7554	5	0	1	4	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0007	7560	4	0	4	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0008	7557	4	0	2	1	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0009	7557	3	0	0	3	0	0	copy fasta	NCOR2	chr12	124319415	124572612