JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NCOR2_chr12_124319415_124572612	0/0	c0110	7545	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0111	7554	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0112	7554	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0113	7554	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0114	7554	1	0	1	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0115	7554	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0116	7554	1	0	0	0	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0117	7554	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0118	7554	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0119	7554	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0120	7554	1	0	1	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0121	7554	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0122	7554	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0123	7554	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0124	7554	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0125	7554	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0126	7554	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0127	7545	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0128	7545	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0129	7542	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0130	7563	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0131	7557	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0132	7557	1	0	0	0	1	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0133	7560	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0134	7545	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0135	7557	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0136	7557	1	0	1	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0137	7554	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0138	7557	1	0	0	0	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0139	7563	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0140	7563	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0141	7563	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0142	7560	1	0	1	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0143	7560	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0144	7557	1	0	0	0	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0145	7557	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0146	7557	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0147	7557	1	0	1	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0148	7557	1	0	1	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0149	7557	1	0	1	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0150	7554	1	0	0	0	1	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0151	7554	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0152	7554	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0153	7554	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0154	7554	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0155	7545	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0156	7545	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0157	7533	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	c0158	7560	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCR1_chr19_54901148_54918073	0/0	c0001	915	213	25	51	98	10	29	copy fasta	NCR1	chr19	54901148	54918073