JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NCR1_chr19_54901148_54918073	0/1	c0002	915	111	2	11	79	3	15	copy fasta	NCR1	chr19	54901148	54918073
NCR1_chr19_54901148_54918073	0/0	c0003	915	102	66	16	11	3	6	copy fasta	NCR1	chr19	54901148	54918073
NCR1_chr19_54901148_54918073	0/0	c0004	912	26	0	4	22	0	0	copy fasta	NCR1	chr19	54901148	54918073
NCR1_chr19_54901148_54918073	0/0	c0005	915	2	2	0	0	0	0	copy fasta	NCR1	chr19	54901148	54918073
NCR1_chr19_54901148_54918073	0/0	c0006	915	1	1	0	0	0	0	copy fasta	NCR1	chr19	54901148	54918073
NCR1_chr19_54901148_54918073	0/0	c0007	915	1	1	0	0	0	0	copy fasta	NCR1	chr19	54901148	54918073
NCR1_chr19_54901148_54918073	0/0	c0008	915	1	1	0	0	0	0	copy fasta	NCR1	chr19	54901148	54918073
NCR2_chr6_41330608_41355889	0/0	c0001	831	203	7	53	98	13	32	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	1/1	c0002	831	88	39	11	26	0	10	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	c0003	831	69	5	4	56	2	2	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	c0004	831	22	20	2	0	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	c0005	831	11	7	0	2	1	1	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	c0006	831	9	2	3	0	2	2	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	c0007	831	8	4	2	2	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	c0008	831	6	6	0	0	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	c0009	831	5	1	1	2	0	1	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	c0010	831	4	0	0	4	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	c0011	831	3	2	1	0	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	c0012	831	2	0	0	2	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	c0013	831	2	2	0	0	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	c0014	831	1	0	1	0	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	c0015	831	1	0	0	1	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	c0016	831	1	1	0	0	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	c0017	831	1	0	0	1	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	c0018	831	1	1	0	0	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	c0019	831	1	1	0	0	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR3LG1_chr11_17346800_17382341	1/0	c0001	1365	229	44	40	112	10	22	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	c0002	1365	99	32	16	35	2	14	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	c0003	1363	20	0	14	2	2	2	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	c0004	1365	12	3	4	3	0	2	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	c0005	1365	3	3	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	c0006	1365	3	0	0	3	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	c0007	1365	3	3	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	c0008	1365	2	0	2	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/1	c0009	1365	1	0	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	c0010	1365	1	0	0	0	0	1	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	c0011	1365	1	1	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	c0012	1365	1	0	1	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	c0013	1365	1	0	1	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	c0014	1365	1	1	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	c0015	1365	1	0	0	1	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	c0016	1365	1	0	0	0	0	1	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	c0017	1365	1	1	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3_chr6_31583895_31598006	0/1	c0001	606	366	69	68	184	16	28	copy fasta	NCR3	chr6	31583895	31598006
NCR3_chr6_31583895_31598006	0/0	c0002	606	22	0	0	19	0	3	copy fasta	NCR3	chr6	31583895	31598006
NCR3_chr6_31583895_31598006	0/0	c0003	606	19	6	1	3	1	8	copy fasta	NCR3	chr6	31583895	31598006
NCR3_chr6_31583895_31598006	0/0	c0004	606	14	7	5	0	1	1	copy fasta	NCR3	chr6	31583895	31598006
NCR3_chr6_31583895_31598006	0/0	c0005	606	7	1	1	0	0	5	copy fasta	NCR3	chr6	31583895	31598006
NCR3_chr6_31583895_31598006	0/0	c0006	606	5	0	0	4	0	1	copy fasta	NCR3	chr6	31583895	31598006
NCR3_chr6_31583895_31598006	0/0	c0007	606	3	0	3	0	0	0	copy fasta	NCR3	chr6	31583895	31598006