JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NCR3_chr6_31583895_31598006	0/0	c0008	606	3	3	0	0	0	0	copy fasta	NCR3	chr6	31583895	31598006
NCS1_chr9_130167404_130242303	1/1	c0001	573	239	53	46	90	11	37	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	c0002	573	106	37	34	23	5	7	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	c0003	573	2	0	0	0	0	2	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	c0004	573	1	0	0	1	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCSTN_chr1_160338383_160363949	1/1	c0001	2130	368	53	71	186	14	42	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	c0002	2130	22	22	0	0	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	c0003	2130	17	4	0	13	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	c0004	2130	13	0	0	13	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	c0005	2130	7	1	2	0	2	2	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	c0006	2130	6	4	2	0	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	c0007	2130	3	3	0	0	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	c0008	2130	2	0	2	0	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	c0009	2130	2	2	0	0	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	c0010	2130	1	1	0	0	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	c0011	2130	1	1	0	0	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	c0012	2130	1	0	0	1	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	c0013	2142	1	0	0	1	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	c0014	2130	1	0	0	1	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	c0015	2130	1	0	0	1	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	c0016	2130	1	1	0	0	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NCSTN_chr1_160338383_160363949	0/0	c0017	2130	1	0	1	0	0	0	copy fasta	NCSTN	chr1	160338383	160363949
NDC1_chr1_53760478_53843296	1/1	c0001	2025	185	69	25	56	6	27	copy fasta	NDC1	chr1	53760478	53843296
NDC1_chr1_53760478_53843296	0/0	c0002	2025	5	5	0	0	0	0	copy fasta	NDC1	chr1	53760478	53843296
NDC1_chr1_53760478_53843296	0/0	c0003	2025	3	3	0	0	0	0	copy fasta	NDC1	chr1	53760478	53843296
NDC1_chr1_53760478_53843296	0/0	c0004	2064	1	0	0	0	0	1	copy fasta	NDC1	chr1	53760478	53843296
NDC1_chr1_53760478_53843296	0/0	c0005	2025	1	1	0	0	0	0	copy fasta	NDC1	chr1	53760478	53843296
NDC1_chr1_53760478_53843296	0/0	c0006	2025	1	0	1	0	0	0	copy fasta	NDC1	chr1	53760478	53843296
NDC80_chr18_2566557_2621635	1/0	c0001	1929	296	71	47	138	12	27	copy fasta	NDC80	chr18	2566557	2621635
NDC80_chr18_2566557_2621635	0/1	c0002	1929	68	17	10	21	2	17	copy fasta	NDC80	chr18	2566557	2621635
NDC80_chr18_2566557_2621635	0/0	c0003	1929	34	3	11	16	2	2	copy fasta	NDC80	chr18	2566557	2621635
NDC80_chr18_2566557_2621635	0/0	c0004	1929	2	0	2	0	0	0	copy fasta	NDC80	chr18	2566557	2621635
NDC80_chr18_2566557_2621635	0/0	c0005	1929	1	1	0	0	0	0	copy fasta	NDC80	chr18	2566557	2621635
NDC80_chr18_2566557_2621635	0/0	c0006	1929	1	0	0	1	0	0	copy fasta	NDC80	chr18	2566557	2621635
NDE1_chr16_15645245_15731353	0/1	c0001	1008	359	91	65	155	12	35	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	c0002	1008	5	0	2	0	2	1	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	c0003	1008	1	1	0	0	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	c0004	1008	1	0	1	0	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDE1_chr16_15645245_15731353	0/0	c0005	1008	1	0	0	1	0	0	copy fasta	NDE1	chr16	15645245	15731353
NDEL1_chr17_8430884_8473163	1/1	c0001	1038	379	94	64	164	14	41	copy fasta	NDEL1	chr17	8430884	8473163
NDEL1_chr17_8430884_8473163	0/0	c0002	1038	2	2	0	0	0	0	copy fasta	NDEL1	chr17	8430884	8473163
NDEL1_chr17_8430884_8473163	0/0	c0003	1038	1	0	0	0	0	1	copy fasta	NDEL1	chr17	8430884	8473163
NDFIP1_chr5_142103779_142159440	1/1	c0001	666	379	78	73	178	15	33	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	c0002	666	6	5	1	0	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	c0003	666	2	2	0	0	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	c0004	666	2	0	0	0	1	1	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	c0005	666	1	1	0	0	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	c0006	666	1	1	0	0	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP1_chr5_142103779_142159440	0/0	c0007	666	1	1	0	0	0	0	copy fasta	NDFIP1	chr5	142103779	142159440
NDFIP2_chr13_79476155_79561077	1/1	c0001	1011	247	63	41	99	13	29	copy fasta	NDFIP2	chr13	79476155	79561077