JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NDFIP2_chr13_79476155_79561077	0/0	c0002	1011	16	1	7	0	3	5	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	c0003	1011	16	15	1	0	0	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	c0004	1011	4	3	1	0	0	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	c0005	1011	2	2	0	0	0	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDFIP2_chr13_79476155_79561077	0/0	c0006	1011	1	0	0	1	0	0	copy fasta	NDFIP2	chr13	79476155	79561077
NDNF_chr4_121030613_121077535	0/1	c0001	1707	134	8	33	65	10	17	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	c0002	1707	73	10	16	33	3	11	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	c0003	1707	57	20	4	25	3	5	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	1/0	c0004	1707	56	28	10	10	2	5	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	c0005	1707	12	10	2	0	0	0	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	c0006	1707	9	0	1	7	0	1	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	c0007	1707	5	5	0	0	0	0	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	c0008	1707	3	3	0	0	0	0	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	c0009	1707	2	2	0	0	0	0	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	c0010	1707	1	1	0	0	0	0	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	c0011	1707	1	1	0	0	0	0	copy fasta	NDNF	chr4	121030613	121077535
NDNF_chr4_121030613_121077535	0/0	c0012	1707	1	0	0	0	0	1	copy fasta	NDNF	chr4	121030613	121077535
NDN_chr15_23680400_23692305	1/1	c0001	966	353	84	58	147	15	47	copy fasta	NDN	chr15	23680400	23692305
NDN_chr15_23680400_23692305	0/0	c0002	966	90	4	18	62	3	3	copy fasta	NDN	chr15	23680400	23692305
NDN_chr15_23680400_23692305	0/0	c0003	966	5	5	0	0	0	0	copy fasta	NDN	chr15	23680400	23692305
NDN_chr15_23680400_23692305	0/0	c0004	966	1	0	0	1	0	0	copy fasta	NDN	chr15	23680400	23692305
NDN_chr15_23680400_23692305	0/0	c0005	966	1	1	0	0	0	0	copy fasta	NDN	chr15	23680400	23692305
NDOR1_chr9_137200700_137224361	1/1	c0001	1794	257	71	48	100	11	25	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	c0002	1794	50	5	11	24	3	7	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	c0003	1794	16	0	5	11	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	c0004	1794	14	0	0	12	0	2	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	c0005	1794	12	0	5	1	2	4	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	c0006	1794	11	0	0	11	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	c0007	1794	6	0	5	0	0	1	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	c0008	1794	4	4	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	c0009	1794	3	3	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	c0010	1794	2	2	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	c0011	1794	1	1	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	c0012	1794	1	1	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	c0013	1794	1	0	0	0	0	1	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	c0014	1794	1	1	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	c0015	1794	1	0	1	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	c0016	1794	1	0	1	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	c0017	1794	1	0	0	1	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	c0018	1794	1	0	1	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	c0019	1794	1	1	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	c0020	1794	1	1	0	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDOR1_chr9_137200700_137224361	0/0	c0021	1794	1	0	1	0	0	0	copy fasta	NDOR1	chr9	137200700	137224361
NDP_chrX_43943776_43978390	1/1	c0001	402	325	77	63	136	13	34	copy fasta	NDP	chrX	43943776	43978390
NDP_chrX_43943776_43978390	0/0	c0002	402	5	3	2	0	0	0	copy fasta	NDP	chrX	43943776	43978390
NDP_chrX_43943776_43978390	0/0	c0003	402	1	0	0	1	0	0	copy fasta	NDP	chrX	43943776	43978390
NDP_chrX_43943776_43978390	0/0	c0004	402	1	0	0	1	0	0	copy fasta	NDP	chrX	43943776	43978390
NDRG1_chr8_133232175_133302252	1/1	c0001	1185	352	77	72	146	16	39	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	c0002	1185	7	7	0	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	c0003	1185	7	6	1	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252