JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NDRG1_chr8_133232175_133302252	0/0	c0004	1185	7	5	2	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	c0005	1185	1	0	0	0	0	1	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	c0006	1215	1	1	0	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	c0007	1185	1	1	0	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	c0008	1185	1	0	1	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG1_chr8_133232175_133302252	0/0	c0009	1215	1	1	0	0	0	0	copy fasta	NDRG1	chr8	133232175	133302252
NDRG2_chr14_21011772_21030061	1/1	c0001	1116	411	93	80	176	18	42	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	c0002	1116	48	0	0	47	0	1	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	c0003	1116	8	0	0	7	0	1	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	c0004	1116	6	6	0	0	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	c0005	1116	2	0	2	0	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	c0006	1116	1	0	0	0	0	1	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	c0007	1116	1	0	0	1	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	c0008	1116	1	0	0	0	0	1	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	c0009	1116	1	0	0	1	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG2_chr14_21011772_21030061	0/0	c0010	1116	1	1	0	0	0	0	copy fasta	NDRG2	chr14	21011772	21030061
NDRG3_chr20_36646771_36751090	1/1	c0001	1128	296	82	64	102	8	38	copy fasta	NDRG3	chr20	36646771	36751090
NDRG3_chr20_36646771_36751090	0/0	c0002	1128	2	0	2	0	0	0	copy fasta	NDRG3	chr20	36646771	36751090
NDRG4_chr16_58495143_58518619	0/0	c0001	1059	199	42	15	114	6	22	copy fasta	NDRG4	chr16	58495143	58518619
NDRG4_chr16_58495143_58518619	0/0	c0002	1059	167	49	28	71	6	13	copy fasta	NDRG4	chr16	58495143	58518619
NDRG4_chr16_58495143_58518619	1/1	c0003	1059	48	6	23	5	5	7	copy fasta	NDRG4	chr16	58495143	58518619
NDRG4_chr16_58495143_58518619	0/0	c0004	1059	7	0	2	0	1	4	copy fasta	NDRG4	chr16	58495143	58518619
NDRG4_chr16_58495143_58518619	0/0	c0005	1059	1	0	0	1	0	0	copy fasta	NDRG4	chr16	58495143	58518619
NDRG4_chr16_58495143_58518619	0/0	c0006	1059	1	0	0	1	0	0	copy fasta	NDRG4	chr16	58495143	58518619
NDRG4_chr16_58495143_58518619	0/0	c0007	1059	1	0	1	0	0	0	copy fasta	NDRG4	chr16	58495143	58518619
NDRG4_chr16_58495143_58518619	0/0	c0008	1059	1	1	0	0	0	0	copy fasta	NDRG4	chr16	58495143	58518619
NDRG4_chr16_58495143_58518619	0/0	c0009	1059	1	0	1	0	0	0	copy fasta	NDRG4	chr16	58495143	58518619
NDST1_chr5_150503131_150563211	0/0	c0001	2649	204	70	20	98	3	13	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	c0002	2649	75	7	26	23	3	16	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	c0003	2649	28	0	0	27	1	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	1/0	c0004	2649	19	1	4	10	1	2	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/1	c0005	2649	13	2	7	0	2	1	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	c0006	2649	10	10	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	c0007	2649	9	0	0	9	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	c0008	2649	8	0	0	0	0	8	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	c0009	2649	8	0	5	0	1	2	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	c0010	2649	7	0	2	4	1	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	c0011	2649	2	2	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	c0012	2649	1	0	0	0	0	1	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	c0013	2649	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	c0014	2649	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	c0015	2649	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	c0016	2649	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	c0017	2649	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	c0018	2649	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	c0019	2649	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	c0020	2649	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	c0021	2649	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	c0022	2649	1	0	0	0	0	1	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	c0023	2649	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211