JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NDST1_chr5_150503131_150563211	0/0	c0024	2649	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	c0025	2649	1	0	0	1	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST1_chr5_150503131_150563211	0/0	c0026	2649	1	1	0	0	0	0	copy fasta	NDST1	chr5	150503131	150563211
NDST2_chr10_73796916_73816598	1/1	c0001	2652	366	82	52	180	10	40	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	c0002	2652	2	2	0	0	0	0	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	c0003	2652	1	1	0	0	0	0	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	c0004	2652	1	0	0	1	0	0	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	c0005	2652	1	0	0	1	0	0	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	c0006	2652	1	0	0	1	0	0	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	c0007	2652	1	1	0	0	0	0	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	c0008	2652	1	1	0	0	0	0	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	c0009	2652	1	1	0	0	0	0	copy fasta	NDST2	chr10	73796916	73816598
NDST2_chr10_73796916_73816598	0/0	c0010	2652	1	0	0	1	0	0	copy fasta	NDST2	chr10	73796916	73816598
NDST3_chr4_118029486_118263634	1/1	c0001	2622	112	22	15	69	1	3	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	c0002	2622	39	8	6	16	1	8	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	c0003	2622	29	3	13	6	0	7	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	c0004	2622	9	9	0	0	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	c0005	2622	5	5	0	0	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	c0006	2622	4	4	0	0	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	c0007	2622	4	3	1	0	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	c0008	2622	2	1	0	0	0	1	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	c0009	2622	2	2	0	0	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	c0010	2622	2	2	0	0	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	c0011	2622	1	0	0	0	0	1	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	c0012	2622	1	0	0	1	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	c0013	2622	1	1	0	0	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	c0014	2622	1	0	1	0	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	c0015	2622	1	0	1	0	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	c0016	2622	1	0	1	0	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	c0017	2622	1	1	0	0	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST3_chr4_118029486_118263634	0/0	c0018	2622	1	1	0	0	0	0	copy fasta	NDST3	chr4	118029486	118263634
NDST4_chr4_114822763_115118620	1/1	c0001	2619	88	24	13	32	6	11	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	c0002	2619	60	24	11	15	3	7	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	c0003	2619	11	9	2	0	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	c0004	2619	7	7	0	0	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	c0005	2619	5	4	1	0	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	c0006	2619	3	2	0	0	1	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	c0007	2619	2	2	0	0	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	c0008	2619	2	2	0	0	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	c0009	2619	2	1	1	0	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	c0010	2619	2	0	0	2	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	c0011	2619	1	1	0	0	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	c0012	2619	1	0	0	1	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	c0013	2619	1	1	0	0	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	c0014	2619	1	1	0	0	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	c0015	2619	1	1	0	0	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	c0016	2619	1	1	0	0	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	c0017	2619	1	1	0	0	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDST4_chr4_114822763_115118620	0/0	c0018	2619	1	1	0	0	0	0	copy fasta	NDST4	chr4	114822763	115118620
NDUFA10_chr2_239952372_240030342	0/0	c0001	1068	128	56	14	46	2	10	copy fasta	NDUFA10	chr2	239952372	240030342