JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
APBB1_chr11_6390125_6424094	0/0	c0007	2133	3	3	0	0	0	0	copy fasta	APBB1	chr11	6390125	6424094
APBB1_chr11_6390125_6424094	0/0	c0008	2133	1	0	0	0	1	0	copy fasta	APBB1	chr11	6390125	6424094
APBB1_chr11_6390125_6424094	0/0	c0009	2133	1	1	0	0	0	0	copy fasta	APBB1	chr11	6390125	6424094
APBB1_chr11_6390125_6424094	0/0	c0010	2133	1	1	0	0	0	0	copy fasta	APBB1	chr11	6390125	6424094
APBB1_chr11_6390125_6424094	0/0	c0011	2133	1	1	0	0	0	0	copy fasta	APBB1	chr11	6390125	6424094
APBB1_chr11_6390125_6424094	0/0	c0012	2133	1	1	0	0	0	0	copy fasta	APBB1	chr11	6390125	6424094
APBB1_chr11_6390125_6424094	0/0	c0013	2133	1	1	0	0	0	0	copy fasta	APBB1	chr11	6390125	6424094
APBB1_chr11_6390125_6424094	0/0	c0014	2133	1	0	1	0	0	0	copy fasta	APBB1	chr11	6390125	6424094
APBB2_chr4_40805027_41219542	1/0	c0001	2280	66	44	9	8	1	3	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	c0002	2280	46	2	13	19	4	8	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/1	c0003	2280	36	12	10	11	1	1	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	c0004	2280	27	6	8	8	2	3	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	c0005	2280	11	10	1	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	c0006	2280	3	0	3	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	c0007	2280	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	c0008	2280	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	c0009	2280	1	0	0	0	0	1	copy fasta	APBB2	chr4	40805027	41219542
APBB3_chr5_140553268_140569598	0/1	c0001	1461	190	29	47	86	8	19	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	c0002	1461	91	47	12	17	4	11	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	c0003	1461	61	0	0	58	1	2	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	1/0	c0004	1461	35	5	6	19	0	4	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	c0005	1461	7	6	1	0	0	0	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	c0006	1461	6	5	1	0	0	0	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	c0007	1461	5	2	2	0	1	0	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	c0008	1461	4	0	0	4	0	0	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	c0009	1461	2	0	0	0	2	0	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	c0010	1461	2	0	0	2	0	0	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	c0011	1461	2	0	1	0	0	1	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	c0012	1461	1	1	0	0	0	0	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	c0013	1461	1	1	0	0	0	0	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	c0014	1461	1	0	0	0	1	0	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	c0015	1461	1	0	0	0	1	0	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	c0016	1461	1	0	0	1	0	0	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	c0017	1461	1	0	0	0	0	1	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	c0018	1461	1	0	0	1	0	0	copy fasta	APBB3	chr5	140553268	140569598
APC2_chr19_1445121_1478244	0/0	c0001	6912	207	26	54	84	12	31	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0002	6912	18	15	0	1	1	1	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0003	6912	14	0	0	13	0	1	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0004	6912	9	9	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	1/0	c0005	6912	9	1	4	0	1	2	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0006	6912	6	1	3	0	0	2	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0007	6912	6	6	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/1	c0008	6912	5	0	3	0	0	1	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0009	6912	4	3	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0010	6912	4	4	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0011	6912	3	3	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0012	6912	2	0	2	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0013	6912	2	0	0	2	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0014	6912	2	1	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0015	6912	2	2	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244