JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NDUFA10_chr2_239952372_240030342	0/1	c0002	1068	110	12	24	57	6	10	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	1/0	c0003	1068	93	10	18	44	3	17	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	c0004	1068	42	3	9	22	4	4	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	c0005	1068	21	8	11	0	1	1	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	c0006	1068	8	6	2	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	c0007	1068	4	0	0	4	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	c0008	1068	2	0	0	2	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	c0009	1068	2	0	0	2	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	c0010	1068	1	1	0	0	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA10_chr2_239952372_240030342	0/0	c0011	1068	1	0	0	1	0	0	copy fasta	NDUFA10	chr2	239952372	240030342
NDUFA11_chr19_5889675_5908790	1/1	c0001	426	355	86	71	138	12	46	copy fasta	NDUFA11	chr19	5889675	5908790
NDUFA11_chr19_5889675_5908790	0/0	c0002	426	7	7	0	0	0	0	copy fasta	NDUFA11	chr19	5889675	5908790
NDUFA11_chr19_5889675_5908790	0/0	c0003	426	1	0	1	0	0	0	copy fasta	NDUFA11	chr19	5889675	5908790
NDUFA11_chr19_5889675_5908790	0/0	c0004	426	1	1	0	0	0	0	copy fasta	NDUFA11	chr19	5889675	5908790
NDUFA12_chr12_94966333_95008697	1/1	c0001	438	439	90	78	205	18	46	copy fasta	NDUFA12	chr12	94966333	95008697
NDUFA12_chr12_94966333_95008697	0/0	c0002	438	3	0	0	3	0	0	copy fasta	NDUFA12	chr12	94966333	95008697
NDUFA13_chr19_19511225_19533198	1/1	c0001	435	378	96	63	151	18	48	copy fasta	NDUFA13	chr19	19511225	19533198
NDUFA13_chr19_19511225_19533198	0/0	c0002	435	1	0	0	1	0	0	copy fasta	NDUFA13	chr19	19511225	19533198
NDUFA13_chr19_19511225_19533198	0/0	c0003	464	1	0	1	0	0	0	copy fasta	NDUFA13	chr19	19511225	19533198
NDUFA1_chrX_119866832_119881662	1/1	c0001	213	300	76	48	136	11	27	copy fasta	NDUFA1	chrX	119866832	119881662
NDUFA2_chr5_140640285_140652630	1/1	c0001	300	400	95	56	188	16	43	copy fasta	NDUFA2	chr5	140640285	140652630
NDUFA2_chr5_140640285_140652630	0/0	c0002	300	2	2	0	0	0	0	copy fasta	NDUFA2	chr5	140640285	140652630
NDUFA2_chr5_140640285_140652630	0/0	c0003	300	1	0	0	0	0	1	copy fasta	NDUFA2	chr5	140640285	140652630
NDUFA2_chr5_140640285_140652630	0/0	c0004	300	1	1	0	0	0	0	copy fasta	NDUFA2	chr5	140640285	140652630
NDUFA2_chr5_140640285_140652630	0/0	c0005	300	1	0	0	1	0	0	copy fasta	NDUFA2	chr5	140640285	140652630
NDUFA2_chr5_140640285_140652630	0/0	c0006	300	1	0	0	1	0	0	copy fasta	NDUFA2	chr5	140640285	140652630
NDUFA3_chr19_54097855_54112568	0/1	c0001	255	412	82	77	195	16	41	copy fasta	NDUFA3	chr19	54097855	54112568
NDUFA3_chr19_54097855_54112568	0/0	c0002	255	25	16	5	4	0	0	copy fasta	NDUFA3	chr19	54097855	54112568
NDUFA3_chr19_54097855_54112568	0/0	c0003	255	1	0	0	1	0	0	copy fasta	NDUFA3	chr19	54097855	54112568
NDUFA3_chr19_54097855_54112568	0/0	c0004	255	1	0	0	0	0	1	copy fasta	NDUFA3	chr19	54097855	54112568
NDUFA4L2_chr12_57229903_57242104	1/1	c0001	264	399	100	66	171	16	44	copy fasta	NDUFA4L2	chr12	57229903	57242104
NDUFA4L2_chr12_57229903_57242104	0/0	c0002	264	3	0	0	3	0	0	copy fasta	NDUFA4L2	chr12	57229903	57242104
NDUFA4_chr7_10926943_10945153	1/1	c0001	246	449	95	86	218	12	36	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA4_chr7_10926943_10945153	0/0	c0002	246	1	1	0	0	0	0	copy fasta	NDUFA4	chr7	10926943	10945153
NDUFA5_chr7_123531997_123562818	1/1	c0001	351	413	94	66	189	18	44	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA5_chr7_123531997_123562818	0/0	c0002	351	1	0	0	1	0	0	copy fasta	NDUFA5	chr7	123531997	123562818
NDUFA6_chr22_42080526_42095772	0/0	c0001	387	255	40	49	131	9	26	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA6_chr22_42080526_42095772	0/0	c0002	387	141	52	31	36	6	16	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA6_chr22_42080526_42095772	0/0	c0003	387	1	1	0	0	0	0	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA6_chr22_42080526_42095772	0/0	c0004	387	1	0	0	1	0	0	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA6_chr22_42080526_42095772	0/0	c0005	387	1	1	0	0	0	0	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA6_chr22_42080526_42095772	0/0	c0006	387	1	1	0	0	0	0	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA6_chr22_42080526_42095772	0/0	c0007	387	1	0	0	0	1	0	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA6_chr22_42080526_42095772	0/1	c0008	387	1	0	0	0	0	0	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA6_chr22_42080526_42095772	0/0	c0009	387	1	1	0	0	0	0	copy fasta	NDUFA6	chr22	42080526	42095772
NDUFA7_chr19_8306284_8326375	1/1	c0001	342	336	85	63	136	13	37	copy fasta	NDUFA7	chr19	8306284	8326375
NDUFA7_chr19_8306284_8326375	0/0	c0002	342	48	5	17	21	3	2	copy fasta	NDUFA7	chr19	8306284	8326375
NDUFA7_chr19_8306284_8326375	0/0	c0003	342	11	0	0	11	0	0	copy fasta	NDUFA7	chr19	8306284	8326375
NDUFA7_chr19_8306284_8326375	0/0	c0004	342	2	2	0	0	0	0	copy fasta	NDUFA7	chr19	8306284	8326375
NDUFA7_chr19_8306284_8326375	0/0	c0005	342	2	2	0	0	0	0	copy fasta	NDUFA7	chr19	8306284	8326375