JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NDUFA7_chr19_8306284_8326375	0/0	c0006	251	1	0	0	1	0	0	copy fasta	NDUFA7	chr19	8306284	8326375
NDUFA7_chr19_8306284_8326375	0/0	c0007	342	1	0	0	0	0	1	copy fasta	NDUFA7	chr19	8306284	8326375
NDUFA7_chr19_8306284_8326375	0/0	c0008	342	1	0	0	1	0	0	copy fasta	NDUFA7	chr19	8306284	8326375
NDUFA8_chr9_122139058_122164779	1/1	c0001	519	296	78	40	149	1	26	copy fasta	NDUFA8	chr9	122139058	122164779
NDUFA8_chr9_122139058_122164779	0/0	c0002	519	122	14	30	47	11	20	copy fasta	NDUFA8	chr9	122139058	122164779
NDUFA8_chr9_122139058_122164779	0/0	c0003	519	1	0	1	0	0	0	copy fasta	NDUFA8	chr9	122139058	122164779
NDUFA8_chr9_122139058_122164779	0/0	c0004	519	1	0	1	0	0	0	copy fasta	NDUFA8	chr9	122139058	122164779
NDUFA9_chr12_4644114_4699317	1/1	c0001	1134	347	84	69	144	10	38	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	c0002	1134	4	4	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	c0003	1134	4	0	2	0	2	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	c0004	1134	3	3	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	c0005	1134	2	0	2	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	c0006	1134	1	0	1	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFA9_chr12_4644114_4699317	0/0	c0007	1134	1	1	0	0	0	0	copy fasta	NDUFA9	chr12	4644114	4699317
NDUFAB1_chr16_23576014_23601316	1/1	c0001	471	295	56	58	135	10	34	copy fasta	NDUFAB1	chr16	23576014	23601316
NDUFAB1_chr16_23576014_23601316	0/0	c0002	471	63	21	4	26	6	6	copy fasta	NDUFAB1	chr16	23576014	23601316
NDUFAB1_chr16_23576014_23601316	0/0	c0003	471	1	0	0	1	0	0	copy fasta	NDUFAB1	chr16	23576014	23601316
NDUFAB1_chr16_23576014_23601316	0/0	c0004	471	1	1	0	0	0	0	copy fasta	NDUFAB1	chr16	23576014	23601316
NDUFAF1_chr15_41382353_41407496	1/1	c0001	984	238	50	35	117	6	28	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF1_chr15_41382353_41407496	0/0	c0002	984	49	18	6	23	1	1	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF1_chr15_41382353_41407496	0/0	c0003	984	25	0	10	1	5	9	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF1_chr15_41382353_41407496	0/0	c0004	984	19	1	11	0	1	6	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF1_chr15_41382353_41407496	0/0	c0005	984	12	11	1	0	0	0	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF1_chr15_41382353_41407496	0/0	c0006	984	6	4	2	0	0	0	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF1_chr15_41382353_41407496	0/0	c0007	984	2	0	1	0	1	0	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF1_chr15_41382353_41407496	0/0	c0008	984	1	0	0	1	0	0	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF1_chr15_41382353_41407496	0/0	c0009	984	1	1	0	0	0	0	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF1_chr15_41382353_41407496	0/0	c0010	984	1	1	0	0	0	0	copy fasta	NDUFAF1	chr15	41382353	41407496
NDUFAF2_chr5_60940205_61158026	0/0	c0001	510	170	47	32	66	5	20	copy fasta	NDUFAF2	chr5	60940205	61158026
NDUFAF2_chr5_60940205_61158026	1/1	c0002	510	88	31	20	12	9	14	copy fasta	NDUFAF2	chr5	60940205	61158026
NDUFAF2_chr5_60940205_61158026	0/0	c0003	510	6	6	0	0	0	0	copy fasta	NDUFAF2	chr5	60940205	61158026
NDUFAF2_chr5_60940205_61158026	0/0	c0004	510	2	2	0	0	0	0	copy fasta	NDUFAF2	chr5	60940205	61158026
NDUFAF3_chr3_49017121_49028495	1/1	c0001	555	270	85	52	79	14	38	copy fasta	NDUFAF3	chr3	49017121	49028495
NDUFAF3_chr3_49017121_49028495	0/0	c0002	555	2	0	2	0	0	0	copy fasta	NDUFAF3	chr3	49017121	49028495
NDUFAF3_chr3_49017121_49028495	0/0	c0003	555	1	1	0	0	0	0	copy fasta	NDUFAF3	chr3	49017121	49028495
NDUFAF3_chr3_49017121_49028495	0/0	c0004	555	1	0	0	1	0	0	copy fasta	NDUFAF3	chr3	49017121	49028495
NDUFAF4_chr6_96884315_96902891	0/0	c0001	528	243	34	45	131	7	26	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/1	c0002	528	160	49	27	66	3	14	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	1/0	c0003	528	23	5	8	0	2	7	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	c0004	528	5	0	0	5	0	0	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	c0005	528	4	4	0	0	0	0	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	c0006	528	4	0	0	4	0	0	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	c0007	528	1	1	0	0	0	0	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	c0008	528	1	0	0	0	0	1	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF4_chr6_96884315_96902891	0/0	c0009	528	1	1	0	0	0	0	copy fasta	NDUFAF4	chr6	96884315	96902891
NDUFAF5_chr20_13780028_13826580	1/1	c0001	1038	357	71	63	158	16	47	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	c0002	1038	36	1	3	32	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	c0003	1038	14	14	0	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	c0004	1038	4	0	0	3	0	1	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	c0005	1038	3	3	0	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580