JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NDUFAF5_chr20_13780028_13826580	0/0	c0006	1038	1	1	0	0	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF5_chr20_13780028_13826580	0/0	c0007	1038	1	0	0	1	0	0	copy fasta	NDUFAF5	chr20	13780028	13826580
NDUFAF6_chr8_95019989_95063710	1/1	c0001	1002	328	86	65	134	12	29	copy fasta	NDUFAF6	chr8	95019989	95063710
NDUFAF6_chr8_95019989_95063710	0/0	c0002	1002	3	3	0	0	0	0	copy fasta	NDUFAF6	chr8	95019989	95063710
NDUFAF6_chr8_95019989_95063710	0/0	c0003	1002	1	1	0	0	0	0	copy fasta	NDUFAF6	chr8	95019989	95063710
NDUFAF6_chr8_95019989_95063710	0/0	c0004	1002	1	0	0	0	0	1	copy fasta	NDUFAF6	chr8	95019989	95063710
NDUFAF6_chr8_95019989_95063710	0/0	c0005	1002	1	1	0	0	0	0	copy fasta	NDUFAF6	chr8	95019989	95063710
NDUFAF6_chr8_95019989_95063710	0/0	c0006	1002	1	0	1	0	0	0	copy fasta	NDUFAF6	chr8	95019989	95063710
NDUFAF6_chr8_95019989_95063710	0/0	c0007	1002	1	1	0	0	0	0	copy fasta	NDUFAF6	chr8	95019989	95063710
NDUFAF7_chr2_37226658_37254160	1/1	c0001	1326	366	57	60	193	18	36	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	c0002	1326	29	27	2	0	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	c0003	1326	10	0	8	2	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	c0004	1326	8	8	0	0	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	c0005	1326	6	0	0	6	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	c0006	1326	3	0	3	0	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	c0007	1326	1	0	0	1	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	c0008	1326	1	0	0	1	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	c0009	1326	1	0	0	1	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	c0010	1326	1	0	1	0	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	c0011	1326	1	1	0	0	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	c0012	1326	1	1	0	0	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	c0013	1326	1	0	0	1	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	c0014	1326	1	0	0	1	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	c0015	1326	1	0	0	1	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF7_chr2_37226658_37254160	0/0	c0016	1326	1	0	0	1	0	0	copy fasta	NDUFAF7	chr2	37226658	37254160
NDUFAF8_chr17_81234318_81246310	1/1	c0001	225	274	81	62	98	9	22	copy fasta	NDUFAF8	chr17	81234318	81246310
NDUFAF8_chr17_81234318_81246310	0/0	c0002	225	11	1	2	5	1	2	copy fasta	NDUFAF8	chr17	81234318	81246310
NDUFAF8_chr17_81234318_81246310	0/0	c0003	225	1	0	0	1	0	0	copy fasta	NDUFAF8	chr17	81234318	81246310
NDUFAF8_chr17_81234318_81246310	0/0	c0004	195	1	1	0	0	0	0	copy fasta	NDUFAF8	chr17	81234318	81246310
NDUFAF8_chr17_81234318_81246310	0/0	c0005	225	1	1	0	0	0	0	copy fasta	NDUFAF8	chr17	81234318	81246310
NDUFB10_chr16_1954538_1966975	1/1	c0001	519	354	82	73	136	14	47	copy fasta	NDUFB10	chr16	1954538	1966975
NDUFB10_chr16_1954538_1966975	0/0	c0002	519	78	16	6	55	0	1	copy fasta	NDUFB10	chr16	1954538	1966975
NDUFB10_chr16_1954538_1966975	0/0	c0003	519	9	0	0	9	0	0	copy fasta	NDUFB10	chr16	1954538	1966975
NDUFB10_chr16_1954538_1966975	0/0	c0004	519	2	0	0	2	0	0	copy fasta	NDUFB10	chr16	1954538	1966975
NDUFB10_chr16_1954538_1966975	0/0	c0005	519	1	0	1	0	0	0	copy fasta	NDUFB10	chr16	1954538	1966975
NDUFB10_chr16_1954538_1966975	0/0	c0006	519	1	0	0	1	0	0	copy fasta	NDUFB10	chr16	1954538	1966975
NDUFB10_chr16_1954538_1966975	0/0	c0007	519	1	0	0	1	0	0	copy fasta	NDUFB10	chr16	1954538	1966975
NDUFB11_chrX_47137216_47149702	1/1	c0001	462	269	73	47	113	11	23	copy fasta	NDUFB11	chrX	47137216	47149702
NDUFB11_chrX_47137216_47149702	0/0	c0002	462	1	0	0	1	0	0	copy fasta	NDUFB11	chrX	47137216	47149702
NDUFB11_chrX_47137216_47149702	0/0	c0003	462	1	0	0	0	0	1	copy fasta	NDUFB11	chrX	47137216	47149702
NDUFB11_chrX_47137216_47149702	0/0	c0004	462	1	0	1	0	0	0	copy fasta	NDUFB11	chrX	47137216	47149702
NDUFB11_chrX_47137216_47149702	0/0	c0005	463	1	0	0	1	0	0	copy fasta	NDUFB11	chrX	47137216	47149702
NDUFB11_chrX_47137216_47149702	0/0	c0006	464	1	0	0	1	0	0	copy fasta	NDUFB11	chrX	47137216	47149702
NDUFB1_chr14_92111123_92126706	1/1	c0001	177	441	92	80	201	18	48	copy fasta	NDUFB1	chr14	92111123	92126706
NDUFB1_chr14_92111123_92126706	0/0	c0002	177	1	0	0	1	0	0	copy fasta	NDUFB1	chr14	92111123	92126706
NDUFB2_chr7_140691708_140711643	1/1	c0001	318	304	90	60	97	14	41	copy fasta	NDUFB2	chr7	140691708	140711643
NDUFB2_chr7_140691708_140711643	0/0	c0002	318	1	0	0	0	0	1	copy fasta	NDUFB2	chr7	140691708	140711643
NDUFB2_chr7_140691708_140711643	0/0	c0003	318	1	0	0	1	0	0	copy fasta	NDUFB2	chr7	140691708	140711643
NDUFB3_chr2_201067001_201090750	1/1	c0001	297	331	95	64	122	14	34	copy fasta	NDUFB3	chr2	201067001	201090750
NDUFB3_chr2_201067001_201090750	0/0	c0002	297	1	1	0	0	0	0	copy fasta	NDUFB3	chr2	201067001	201090750