JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NDUFB4_chr3_120591336_120607507	1/1	c0001	390	424	86	76	194	18	48	copy fasta	NDUFB4	chr3	120591336	120607507
NDUFB5_chr3_179599794_179632647	1/1	c0001	570	363	92	69	156	8	36	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	c0002	570	2	2	0	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB5_chr3_179599794_179632647	0/0	c0003	570	1	0	1	0	0	0	copy fasta	NDUFB5	chr3	179599794	179632647
NDUFB6_chr9_32548001_32578159	1/1	c0001	387	372	85	77	156	16	36	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	c0002	387	2	0	0	2	0	0	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	c0003	387	1	1	0	0	0	0	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	c0004	387	1	1	0	0	0	0	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	c0005	387	1	0	1	0	0	0	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB6_chr9_32548001_32578159	0/0	c0006	387	1	1	0	0	0	0	copy fasta	NDUFB6	chr9	32548001	32578159
NDUFB7_chr19_14561078_14577066	0/1	c0001	414	222	84	37	67	7	26	copy fasta	NDUFB7	chr19	14561078	14577066
NDUFB7_chr19_14561078_14577066	1/0	c0002	414	171	7	42	101	3	17	copy fasta	NDUFB7	chr19	14561078	14577066
NDUFB7_chr19_14561078_14577066	0/0	c0003	414	3	0	0	3	0	0	copy fasta	NDUFB7	chr19	14561078	14577066
NDUFB7_chr19_14561078_14577066	0/0	c0004	414	1	0	0	1	0	0	copy fasta	NDUFB7	chr19	14561078	14577066
NDUFB7_chr19_14561078_14577066	0/0	c0005	414	1	0	0	0	0	1	copy fasta	NDUFB7	chr19	14561078	14577066
NDUFB7_chr19_14561078_14577066	0/0	c0006	414	1	0	0	1	0	0	copy fasta	NDUFB7	chr19	14561078	14577066
NDUFB7_chr19_14561078_14577066	0/0	c0007	414	1	1	0	0	0	0	copy fasta	NDUFB7	chr19	14561078	14577066
NDUFB7_chr19_14561078_14577066	0/0	c0008	414	1	0	0	1	0	0	copy fasta	NDUFB7	chr19	14561078	14577066
NDUFB7_chr19_14561078_14577066	0/0	c0009	414	1	0	1	0	0	0	copy fasta	NDUFB7	chr19	14561078	14577066
NDUFB8_chr10_100518740_100534871	1/1	c0001	561	354	90	64	141	16	41	copy fasta	NDUFB8	chr10	100518740	100534871
NDUFB8_chr10_100518740_100534871	0/0	c0002	561	3	0	0	3	0	0	copy fasta	NDUFB8	chr10	100518740	100534871
NDUFB8_chr10_100518740_100534871	0/0	c0003	561	2	0	2	0	0	0	copy fasta	NDUFB8	chr10	100518740	100534871
NDUFB8_chr10_100518740_100534871	0/0	c0004	561	1	1	0	0	0	0	copy fasta	NDUFB8	chr10	100518740	100534871
NDUFB8_chr10_100518740_100534871	0/0	c0005	561	1	1	0	0	0	0	copy fasta	NDUFB8	chr10	100518740	100534871
NDUFB8_chr10_100518740_100534871	0/0	c0006	561	1	0	0	0	0	1	copy fasta	NDUFB8	chr10	100518740	100534871
NDUFB9_chr8_124534123_124554979	1/1	c0001	540	327	86	57	128	14	40	copy fasta	NDUFB9	chr8	124534123	124554979
NDUFB9_chr8_124534123_124554979	0/0	c0002	540	62	11	5	40	0	6	copy fasta	NDUFB9	chr8	124534123	124554979
NDUFB9_chr8_124534123_124554979	0/0	c0003	540	2	0	2	0	0	0	copy fasta	NDUFB9	chr8	124534123	124554979
NDUFB9_chr8_124534123_124554979	0/0	c0004	540	1	1	0	0	0	0	copy fasta	NDUFB9	chr8	124534123	124554979
NDUFC1_chr4_139284931_139307477	1/1	c0001	231	371	88	78	151	16	36	copy fasta	NDUFC1	chr4	139284931	139307477
NDUFC1_chr4_139284931_139307477	0/0	c0002	231	2	2	0	0	0	0	copy fasta	NDUFC1	chr4	139284931	139307477
NDUFC1_chr4_139284931_139307477	0/0	c0003	231	2	2	0	0	0	0	copy fasta	NDUFC1	chr4	139284931	139307477
NDUFC1_chr4_139284931_139307477	0/0	c0004	231	1	0	0	1	0	0	copy fasta	NDUFC1	chr4	139284931	139307477
NDUFC2_chr11_78063297_78084862	0/0	c0001	360	276	75	51	109	13	28	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFC2_chr11_78063297_78084862	1/0	c0002	360	89	7	4	65	1	11	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFC2_chr11_78063297_78084862	0/1	c0003	360	48	4	15	19	4	5	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFC2_chr11_78063297_78084862	0/0	c0004	360	6	6	0	0	0	0	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFC2_chr11_78063297_78084862	0/0	c0005	360	1	0	0	1	0	0	copy fasta	NDUFC2	chr11	78063297	78084862
NDUFS1_chr2_206109817_206164444	1/1	c0001	2184	166	21	26	92	6	19	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	c0002	2184	98	28	14	39	2	15	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	c0003	2184	34	7	21	0	3	3	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	c0004	2184	21	7	1	11	0	2	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	c0005	2184	5	5	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	c0006	2184	5	5	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	c0007	2184	1	0	0	1	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	c0008	2184	1	0	0	0	0	1	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	c0009	2184	1	0	0	1	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	c0010	2184	1	0	0	0	1	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	c0011	2184	1	0	1	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS1_chr2_206109817_206164444	0/0	c0012	2184	1	0	1	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444