JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NDUFS1_chr2_206109817_206164444	0/0	c0013	2184	1	1	0	0	0	0	copy fasta	NDUFS1	chr2	206109817	206164444
NDUFS2_chr1_161197367_161219395	1/0	c0001	1392	273	84	42	100	12	34	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/0	c0002	1392	102	5	18	72	2	5	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/1	c0003	1392	32	2	1	24	1	3	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/0	c0004	1392	18	1	7	4	2	4	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/0	c0005	1392	10	0	0	10	0	0	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/0	c0006	1392	1	0	0	1	0	0	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/0	c0007	1392	1	0	0	0	1	0	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS2_chr1_161197367_161219395	0/0	c0008	1392	1	0	0	1	0	0	copy fasta	NDUFS2	chr1	161197367	161219395
NDUFS3_chr11_47574074_47589562	1/1	c0001	795	412	84	80	186	16	44	copy fasta	NDUFS3	chr11	47574074	47589562
NDUFS3_chr11_47574074_47589562	0/0	c0002	795	4	0	0	4	0	0	copy fasta	NDUFS3	chr11	47574074	47589562
NDUFS3_chr11_47574074_47589562	0/0	c0003	795	2	2	0	0	0	0	copy fasta	NDUFS3	chr11	47574074	47589562
NDUFS3_chr11_47574074_47589562	0/0	c0004	795	1	0	1	0	0	0	copy fasta	NDUFS3	chr11	47574074	47589562
NDUFS3_chr11_47574074_47589562	0/0	c0005	806	1	0	0	1	0	0	copy fasta	NDUFS3	chr11	47574074	47589562
NDUFS3_chr11_47574074_47589562	0/0	c0006	795	1	0	0	1	0	0	copy fasta	NDUFS3	chr11	47574074	47589562
NDUFS3_chr11_47574074_47589562	0/0	c0007	795	1	0	1	0	0	0	copy fasta	NDUFS3	chr11	47574074	47589562
NDUFS4_chr5_53555639_53688338	0/1	c0001	528	232	68	48	89	6	20	copy fasta	NDUFS4	chr5	53555639	53688338
NDUFS4_chr5_53555639_53688338	0/0	c0002	528	50	13	9	15	3	10	copy fasta	NDUFS4	chr5	53555639	53688338
NDUFS4_chr5_53555639_53688338	0/0	c0003	528	50	4	12	26	3	5	copy fasta	NDUFS4	chr5	53555639	53688338
NDUFS4_chr5_53555639_53688338	1/0	c0004	528	39	1	4	30	0	3	copy fasta	NDUFS4	chr5	53555639	53688338
NDUFS4_chr5_53555639_53688338	0/0	c0005	528	2	1	1	0	0	0	copy fasta	NDUFS4	chr5	53555639	53688338
NDUFS4_chr5_53555639_53688338	0/0	c0006	528	1	0	0	1	0	0	copy fasta	NDUFS4	chr5	53555639	53688338
NDUFS4_chr5_53555639_53688338	0/0	c0007	528	1	1	0	0	0	0	copy fasta	NDUFS4	chr5	53555639	53688338
NDUFS4_chr5_53555639_53688338	0/0	c0008	528	1	0	0	1	0	0	copy fasta	NDUFS4	chr5	53555639	53688338
NDUFS4_chr5_53555639_53688338	0/0	c0009	528	1	1	0	0	0	0	copy fasta	NDUFS4	chr5	53555639	53688338
NDUFS4_chr5_53555639_53688338	0/0	c0010	528	1	1	0	0	0	0	copy fasta	NDUFS4	chr5	53555639	53688338
NDUFS5_chr1_39021350_39039615	1/1	c0001	321	437	98	69	202	18	48	copy fasta	NDUFS5	chr1	39021350	39039615
NDUFS5_chr1_39021350_39039615	0/0	c0002	321	1	0	1	0	0	0	copy fasta	NDUFS5	chr1	39021350	39039615
NDUFS6_chr5_1796407_1821048	1/1	c0001	375	439	93	76	202	18	48	copy fasta	NDUFS6	chr5	1796407	1821048
NDUFS6_chr5_1796407_1821048	0/0	c0002	375	4	0	0	4	0	0	copy fasta	NDUFS6	chr5	1796407	1821048
NDUFS6_chr5_1796407_1821048	0/0	c0003	375	1	1	0	0	0	0	copy fasta	NDUFS6	chr5	1796407	1821048
NDUFS7_chr19_1378907_1400584	1/1	c0001	642	229	52	34	115	8	18	copy fasta	NDUFS7	chr19	1378907	1400584
NDUFS7_chr19_1378907_1400584	0/0	c0002	642	187	40	38	71	8	30	copy fasta	NDUFS7	chr19	1378907	1400584
NDUFS7_chr19_1378907_1400584	0/0	c0003	642	1	0	0	1	0	0	copy fasta	NDUFS7	chr19	1378907	1400584
NDUFS7_chr19_1378907_1400584	0/0	c0004	642	1	0	0	1	0	0	copy fasta	NDUFS7	chr19	1378907	1400584
NDUFS8_chr11_68025681_68041644	1/1	c0001	633	406	93	74	175	16	46	copy fasta	NDUFS8	chr11	68025681	68041644
NDUFS8_chr11_68025681_68041644	0/0	c0002	633	1	1	0	0	0	0	copy fasta	NDUFS8	chr11	68025681	68041644
NDUFS8_chr11_68025681_68041644	0/0	c0003	633	1	0	0	1	0	0	copy fasta	NDUFS8	chr11	68025681	68041644
NDUFV1_chr11_67601936_67617554	1/1	c0001	1395	356	72	59	168	16	39	copy fasta	NDUFV1	chr11	67601936	67617554
NDUFV1_chr11_67601936_67617554	0/0	c0002	1395	19	18	1	0	0	0	copy fasta	NDUFV1	chr11	67601936	67617554
NDUFV1_chr11_67601936_67617554	0/0	c0003	1395	8	0	0	8	0	0	copy fasta	NDUFV1	chr11	67601936	67617554
NDUFV1_chr11_67601936_67617554	0/0	c0004	1395	2	2	0	0	0	0	copy fasta	NDUFV1	chr11	67601936	67617554
NDUFV1_chr11_67601936_67617554	0/0	c0005	1395	1	0	0	1	0	0	copy fasta	NDUFV1	chr11	67601936	67617554
NDUFV1_chr11_67601936_67617554	0/0	c0006	1395	1	0	0	0	0	1	copy fasta	NDUFV1	chr11	67601936	67617554
NDUFV1_chr11_67601936_67617554	0/0	c0007	1395	1	0	0	1	0	0	copy fasta	NDUFV1	chr11	67601936	67617554
NDUFV2_chr18_9097699_9139341	0/1	c0001	750	233	54	44	99	12	23	copy fasta	NDUFV2	chr18	9097699	9139341
NDUFV2_chr18_9097699_9139341	1/0	c0002	750	107	20	22	52	3	9	copy fasta	NDUFV2	chr18	9097699	9139341
NDUFV2_chr18_9097699_9139341	0/0	c0003	750	25	16	6	0	1	2	copy fasta	NDUFV2	chr18	9097699	9139341
NDUFV2_chr18_9097699_9139341	0/0	c0004	750	2	2	0	0	0	0	copy fasta	NDUFV2	chr18	9097699	9139341
NDUFV2_chr18_9097699_9139341	0/0	c0005	750	1	0	0	1	0	0	copy fasta	NDUFV2	chr18	9097699	9139341