JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NDUFV3_chr21_42888309_42918299	1/0	c0001	1422	169	26	28	91	4	19	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/1	c0002	1422	107	47	19	18	9	13	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	c0003	1422	35	1	4	25	2	3	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	c0004	1422	27	0	4	17	1	5	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	c0005	1422	3	0	1	1	0	1	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	c0006	1422	2	0	2	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	c0007	1422	1	1	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	c0008	1422	1	1	0	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	c0009	1422	1	0	0	0	0	1	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	c0010	1422	1	0	1	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NDUFV3_chr21_42888309_42918299	0/0	c0011	1422	1	0	1	0	0	0	copy fasta	NDUFV3	chr21	42888309	42918299
NEBL_chr10_20774973_20902311	1/0	c0001	3045	163	45	31	71	5	10	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	c0002	3045	57	28	3	21	0	5	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/1	c0003	3045	28	1	6	10	5	5	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	c0004	3045	23	1	3	19	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	c0005	3045	19	0	0	18	0	1	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	c0006	3045	14	5	6	0	1	2	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	c0007	3045	10	0	5	1	0	4	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	c0008	3045	6	6	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	c0009	3045	4	0	0	4	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	c0010	3045	2	0	0	2	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	c0011	3045	2	0	0	2	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	c0012	3045	1	0	0	0	1	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	c0013	3045	1	0	0	1	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	c0014	3045	1	0	1	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	c0015	3045	1	0	0	1	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	c0016	3045	1	0	0	0	0	1	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	c0017	3045	1	1	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	c0018	3045	1	0	1	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	c0019	3045	1	0	0	1	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	c0020	3045	1	0	0	1	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEBL_chr10_20774973_20902311	0/0	c0021	3045	1	1	0	0	0	0	copy fasta	NEBL	chr10	20774973	20902311
NEB_chr2_151480339_151739476	0/0	c0001	25578	8	0	0	7	1	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0002	25578	7	0	2	5	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/1	c0003	25578	3	0	1	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0004	25578	3	2	1	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0005	25578	3	0	0	3	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0006	25578	2	0	0	2	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0007	25578	2	0	0	2	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0008	25578	2	0	1	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0009	25578	2	2	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0010	25578	2	0	0	2	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0011	25578	2	2	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0012	25578	2	0	0	2	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0013	25578	2	2	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0014	25578	2	2	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0015	25578	2	0	0	2	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0016	25578	2	2	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0017	25578	2	0	0	2	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0018	25578	2	0	0	2	0	0	copy fasta	NEB	chr2	151480339	151739476