JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NEB_chr2_151480339_151739476	0/0	c0019	25578	2	2	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0020	25578	2	2	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0021	25563	2	2	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0022	25578	1	0	1	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0023	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0024	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0025	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0026	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0027	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0028	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0029	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0030	25578	1	0	1	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0031	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0032	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0033	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0034	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0035	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0036	24120	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0037	25578	1	0	1	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0038	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0039	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0040	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0041	25578	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0042	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0043	25578	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0044	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0045	25578	1	0	1	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0046	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0047	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0048	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0049	25578	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0050	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0051	25578	1	0	0	0	1	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0052	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0053	24120	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0054	25578	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0055	25578	1	0	0	0	1	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0056	24120	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0057	24120	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0058	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0059	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0060	25578	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0061	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0062	25578	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0063	25578	1	0	1	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0064	25578	1	0	1	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0065	24120	1	0	0	0	1	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0066	25578	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0067	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0068	25578	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476