JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NEB_chr2_151480339_151739476	0/0	c0069	25578	1	0	1	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0070	25578	1	0	1	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0071	25578	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0072	25578	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0073	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0074	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0075	25578	1	0	0	0	1	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0076	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0077	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0078	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0079	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0080	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0081	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0082	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0083	25578	1	0	1	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0084	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0085	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0086	25578	1	0	0	0	1	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0087	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0088	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0089	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0090	25578	1	0	0	0	1	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0091	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0092	25578	1	0	0	0	1	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0093	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0094	25578	1	0	1	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0095	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0096	25578	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0097	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0098	25578	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0099	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0100	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0101	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0102	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0103	24120	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0104	24120	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0105	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0106	25578	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0107	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0108	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0109	25578	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0110	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0111	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0112	25578	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0113	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0114	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0115	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0116	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0117	25578	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0118	25578	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476