JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NEB_chr2_151480339_151739476	0/0	c0119	25578	1	0	0	0	0	1	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0120	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0121	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0122	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0123	24120	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0124	24120	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0125	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0126	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0127	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0128	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	1/0	c0129	25578	1	0	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0130	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0131	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0132	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0133	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0134	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0135	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0136	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0137	25578	1	0	1	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0138	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0139	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0140	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0141	22662	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0142	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0143	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0144	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0145	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0146	25578	1	0	1	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0147	25578	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0148	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0149	25563	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0150	25563	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0151	25563	1	1	0	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0152	25563	1	0	1	0	0	0	copy fasta	NEB	chr2	151480339	151739476
NEB_chr2_151480339_151739476	0/0	c0153	25578	1	0	0	1	0	0	copy fasta	NEB	chr2	151480339	151739476
NECAB1_chr8_90786775_90964393	1/1	c0001	1056	247	67	40	108	10	20	copy fasta	NECAB1	chr8	90786775	90964393
NECAB1_chr8_90786775_90964393	0/0	c0002	1056	1	1	0	0	0	0	copy fasta	NECAB1	chr8	90786775	90964393
NECAB2_chr16_83963244_84007776	1/1	c0001	1161	110	6	34	32	10	26	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0002	1161	71	8	10	47	1	5	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0003	1161	36	25	0	11	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0004	1161	29	22	5	2	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0005	1161	25	9	4	8	0	4	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0006	1161	18	2	10	4	1	1	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0007	1161	9	0	1	7	0	1	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0008	1161	7	7	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0009	1161	5	0	0	5	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0010	1161	4	0	3	1	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0011	1161	3	3	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0012	1161	3	3	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0013	1161	3	3	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776