JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NECAB2_chr16_83963244_84007776	0/0	c0014	1161	3	3	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0015	1161	3	0	2	0	1	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0016	1161	2	2	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0017	1161	2	0	0	2	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0018	1161	2	0	0	1	0	1	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0019	1161	1	0	1	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0020	1161	1	0	0	0	0	1	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0021	1161	1	1	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0022	1161	1	0	0	1	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0023	1161	1	0	1	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0024	1161	1	1	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0025	1161	1	0	0	1	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0026	1161	1	1	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0027	1161	1	0	0	0	0	1	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0028	1161	1	1	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0029	1161	1	1	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0030	1161	1	1	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0031	1161	1	0	0	1	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0032	1161	1	0	0	1	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0033	1161	1	0	1	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0034	1161	1	0	0	0	1	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0035	1161	1	0	0	1	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0036	1161	1	1	0	0	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB2_chr16_83963244_84007776	0/0	c0037	1161	1	0	0	1	0	0	copy fasta	NECAB2	chr16	83963244	84007776
NECAB3_chr20_33652087_33679428	1/1	c0001	1191	232	54	44	93	6	33	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	c0002	1191	112	30	13	48	10	11	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	c0003	1191	7	6	1	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	c0004	1191	3	0	3	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	c0005	1191	3	3	0	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	c0006	1191	1	0	1	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	c0007	1191	1	1	0	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	c0008	1191	1	1	0	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	c0009	1191	1	0	0	0	0	1	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	c0010	1191	1	1	0	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	c0011	1191	1	0	0	1	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	c0012	1191	1	1	0	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	c0013	1191	1	0	0	0	0	1	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	c0014	1191	1	1	0	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	c0015	1191	1	1	0	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAB3_chr20_33652087_33679428	0/0	c0016	1191	1	1	0	0	0	0	copy fasta	NECAB3	chr20	33652087	33679428
NECAP1_chr12_8077274_8102881	1/1	c0001	828	429	90	73	200	14	50	copy fasta	NECAP1	chr12	8077274	8102881
NECAP1_chr12_8077274_8102881	0/0	c0002	828	4	4	0	0	0	0	copy fasta	NECAP1	chr12	8077274	8102881
NECAP1_chr12_8077274_8102881	0/0	c0003	828	2	0	0	2	0	0	copy fasta	NECAP1	chr12	8077274	8102881
NECAP1_chr12_8077274_8102881	0/0	c0004	828	1	0	1	0	0	0	copy fasta	NECAP1	chr12	8077274	8102881
NECAP2_chr1_16435724_16465078	1/1	c0001	792	371	79	77	155	18	40	copy fasta	NECAP2	chr1	16435724	16465078
NECAP2_chr1_16435724_16465078	0/0	c0002	792	6	5	1	0	0	0	copy fasta	NECAP2	chr1	16435724	16465078
NECAP2_chr1_16435724_16465078	0/0	c0003	792	3	3	0	0	0	0	copy fasta	NECAP2	chr1	16435724	16465078
NECAP2_chr1_16435724_16465078	0/0	c0004	792	1	0	0	1	0	0	copy fasta	NECAP2	chr1	16435724	16465078
NECAP2_chr1_16435724_16465078	0/0	c0005	792	1	0	0	1	0	0	copy fasta	NECAP2	chr1	16435724	16465078
NECAP2_chr1_16435724_16465078	0/0	c0006	792	1	1	0	0	0	0	copy fasta	NECAP2	chr1	16435724	16465078