JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
APC2_chr19_1445121_1478244	0/0	c0016	6912	2	0	0	2	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0017	6912	2	2	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0018	6912	2	0	0	2	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0019	6912	2	0	2	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0020	6912	2	1	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0021	6912	2	0	0	2	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0022	6912	1	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0023	6912	1	0	0	1	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0024	6912	1	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0025	6912	1	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0026	6912	1	0	0	1	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0027	6912	1	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0028	6912	1	0	0	1	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0029	6912	1	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0030	6912	1	0	0	1	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0031	6912	1	0	0	1	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0032	6912	1	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0033	6912	1	0	0	1	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0034	6912	1	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0035	6912	1	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0036	6912	1	0	0	1	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0037	6912	1	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0038	6912	1	0	0	1	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0039	6912	1	0	0	1	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0040	6912	1	0	0	1	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0041	6912	1	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0042	6912	1	0	0	1	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0043	6912	1	0	0	1	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0044	6912	1	0	0	0	1	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0045	6912	1	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0046	6912	1	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0047	6912	1	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0048	6912	1	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0049	6888	1	0	0	1	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0050	6912	1	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0051	6912	1	0	0	1	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0052	6912	1	0	0	1	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0053	6912	1	0	0	1	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0054	6912	1	0	0	0	1	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0055	6912	1	0	0	1	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0056	6912	1	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0057	6912	1	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0058	6912	1	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0059	6912	1	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0060	6912	1	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0061	6912	1	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0062	6912	1	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0063	6912	1	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0064	6912	1	0	0	1	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	c0065	6912	1	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244