JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NECAP2_chr1_16435724_16465078	0/0	c0007	792	1	0	0	0	0	1	copy fasta	NECAP2	chr1	16435724	16465078
NECAP2_chr1_16435724_16465078	0/0	c0008	792	1	0	0	1	0	0	copy fasta	NECAP2	chr1	16435724	16465078
NECAP2_chr1_16435724_16465078	0/0	c0009	792	1	0	0	0	0	1	copy fasta	NECAP2	chr1	16435724	16465078
NECTIN1_chr11_119655992_119734200	1/1	c0001	1554	317	82	57	135	11	30	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	c0002	1557	13	0	2	9	2	0	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	c0003	1554	4	4	0	0	0	0	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	c0004	1554	4	4	0	0	0	0	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	c0005	1554	3	0	2	0	1	0	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	c0006	1554	2	2	0	0	0	0	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	c0007	1554	2	0	1	0	0	1	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	c0008	1554	1	0	0	1	0	0	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	c0009	1554	1	0	0	1	0	0	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN1_chr11_119655992_119734200	0/0	c0010	1554	1	0	0	0	0	1	copy fasta	NECTIN1	chr11	119655992	119734200
NECTIN2_chr19_44841297_44894223	1/1	c0001	1617	328	78	63	140	12	33	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	c0002	1617	11	0	9	1	0	1	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	c0003	1617	8	8	0	0	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	c0004	1617	5	3	2	0	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	c0005	1617	4	4	0	0	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	c0006	1617	3	0	1	0	2	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	c0007	1617	2	0	2	0	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	c0008	1617	1	0	0	1	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	c0009	1617	1	0	0	1	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	c0010	1617	1	0	0	0	0	1	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	c0011	1617	1	1	0	0	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	c0012	1617	1	0	0	1	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	c0013	1617	1	0	1	0	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	c0014	1617	1	1	0	0	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	c0015	1617	1	1	0	0	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	c0016	1617	1	1	0	0	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	c0017	1617	1	0	0	0	0	1	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN2_chr19_44841297_44894223	0/0	c0018	1617	1	1	0	0	0	0	copy fasta	NECTIN2	chr19	44841297	44894223
NECTIN3_chr3_111066816_111142560	1/1	c0001	1650	249	92	32	102	11	10	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	c0002	1650	57	0	6	50	1	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	c0003	1650	1	0	0	1	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	c0004	1650	1	1	0	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	c0005	1650	1	0	0	1	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	c0006	1650	1	0	0	1	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	c0007	1650	1	0	0	1	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	c0008	1650	1	1	0	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	c0009	1650	1	0	1	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN3_chr3_111066816_111142560	0/0	c0010	1650	1	0	1	0	0	0	copy fasta	NECTIN3	chr3	111066816	111142560
NECTIN4_chr1_161065998_161094558	1/0	c0001	1533	364	68	62	166	17	50	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	c0002	1533	22	0	5	17	0	0	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	c0003	1533	9	0	0	9	0	0	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	c0004	1533	7	1	5	0	1	0	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	c0005	1533	2	0	0	2	0	0	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	c0006	1533	1	0	0	1	0	0	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	c0007	1533	1	0	0	1	0	0	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/0	c0008	1533	1	1	0	0	0	0	copy fasta	NECTIN4	chr1	161065998	161094558
NECTIN4_chr1_161065998_161094558	0/1	c0009	1533	1	0	0	0	0	0	copy fasta	NECTIN4	chr1	161065998	161094558