JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NEDD1_chr12_96902257_96958780	1/1	c0001	1983	387	81	72	183	14	35	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	c0002	1983	6	6	0	0	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	c0003	1983	2	0	0	2	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	c0004	1983	1	0	0	0	0	1	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	c0005	1983	1	1	0	0	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	c0006	1983	1	1	0	0	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	c0007	1983	1	0	0	1	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD1_chr12_96902257_96958780	0/0	c0008	1983	1	1	0	0	0	0	copy fasta	NEDD1	chr12	96902257	96958780
NEDD4L_chr18_58039226_58406539	1/1	c0001	2928	114	57	16	31	2	6	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	c0002	2928	1	1	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	c0003	2928	1	1	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	c0004	2928	1	1	0	0	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4L_chr18_58039226_58406539	0/0	c0005	2928	1	0	0	1	0	0	copy fasta	NEDD4L	chr18	58039226	58406539
NEDD4_chr15_55821922_55998612	0/0	c0001	2703	133	29	35	40	13	16	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	1/1	c0002	2703	99	29	15	51	0	2	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	c0003	2703	36	6	5	20	1	4	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	c0004	2703	26	8	5	13	0	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	c0005	2703	21	1	11	3	2	4	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	c0006	2703	8	7	1	0	0	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	c0007	2703	7	0	1	3	0	3	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	c0008	2703	5	0	0	5	0	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	c0009	2703	3	3	0	0	0	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	c0010	2703	1	0	1	0	0	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	c0011	2703	1	0	0	0	0	1	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	c0012	2703	1	0	0	1	0	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	c0013	2703	1	0	0	0	0	1	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	c0014	2703	1	0	0	0	0	1	copy fasta	NEDD4	chr15	55821922	55998612
NEDD4_chr15_55821922_55998612	0/0	c0015	2703	1	1	0	0	0	0	copy fasta	NEDD4	chr15	55821922	55998612
NEDD8_chr14_24211857_24237367	1/1	c0001	246	418	92	68	196	14	46	copy fasta	NEDD8	chr14	24211857	24237367
NEDD9_chr6_11178298_11237668	0/0	c0001	2505	125	13	25	64	5	18	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0002	2505	57	9	13	27	2	6	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0003	2505	55	18	5	31	0	1	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0004	2505	47	10	11	17	2	7	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0005	2505	40	22	6	7	2	3	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	1/0	c0006	2505	16	0	6	0	6	3	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/1	c0007	2505	12	2	3	3	1	2	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0008	2505	6	5	0	1	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0009	2505	5	5	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0010	2505	5	2	2	0	0	1	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0011	2505	4	4	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0012	2505	2	1	1	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0013	2505	2	2	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0014	2505	2	0	0	2	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0015	2505	2	1	1	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0016	2505	1	1	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0017	2505	1	0	0	1	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0018	2505	1	0	1	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0019	2505	1	0	0	1	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0020	2505	1	0	0	1	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0021	2505	1	0	1	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668