JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NEDD9_chr6_11178298_11237668	0/0	c0022	2505	1	0	0	0	0	1	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0023	2505	1	0	0	1	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0024	2505	1	0	0	1	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0025	2505	1	1	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0026	2505	1	1	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0027	2505	1	1	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0028	2505	1	0	1	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0029	2505	1	0	0	1	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0030	2505	1	0	0	1	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0031	2505	1	1	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0032	2505	1	0	0	1	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEDD9_chr6_11178298_11237668	0/0	c0033	2505	1	1	0	0	0	0	copy fasta	NEDD9	chr6	11178298	11237668
NEFH_chr22_29475218_29496390	0/0	c0001	3081	276	46	54	138	11	27	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0002	3063	42	4	10	19	1	8	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0003	3063	40	6	12	9	4	9	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0004	3063	26	0	1	25	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0005	3081	12	12	0	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/1	c0006	3081	6	0	3	0	2	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0007	3063	5	0	0	3	0	2	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0008	3063	4	3	1	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0009	3081	4	1	0	2	0	1	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0010	3081	4	4	0	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0011	3063	3	2	1	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0012	3063	3	3	0	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0013	3069	3	3	0	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0014	3063	2	2	0	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0015	3081	2	2	0	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0016	3063	2	1	1	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0017	3063	1	0	1	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0018	3081	1	1	0	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0019	3081	1	1	0	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	1/0	c0020	3063	1	0	0	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0021	3081	1	0	0	1	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0022	3063	1	1	0	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0023	3127	1	0	0	1	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0024	3063	1	1	0	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0025	3063	1	0	0	0	0	1	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0026	3045	1	1	0	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0027	3063	1	0	0	1	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0028	3081	1	1	0	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0029	3081	1	1	0	0	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFH_chr22_29475218_29496390	0/0	c0030	3063	1	0	0	1	0	0	copy fasta	NEFH	chr22	29475218	29496390
NEFL_chr8_24945955_24961612	1/1	c0001	1632	385	89	72	166	14	42	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	c0002	1632	5	5	0	0	0	0	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	c0003	1632	3	0	0	3	0	0	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	c0004	1632	3	0	0	3	0	0	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	c0005	1632	3	2	1	0	0	0	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	c0006	1632	2	0	0	2	0	0	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	c0007	1632	2	2	0	0	0	0	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	c0008	1632	2	0	0	0	0	2	copy fasta	NEFL	chr8	24945955	24961612