JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NEFL_chr8_24945955_24961612	0/0	c0009	1632	1	0	1	0	0	0	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	c0010	1632	1	0	0	0	0	1	copy fasta	NEFL	chr8	24945955	24961612
NEFL_chr8_24945955_24961612	0/0	c0011	1632	1	0	0	0	0	1	copy fasta	NEFL	chr8	24945955	24961612
NEFM_chr8_24908761_24924093	0/1	c0001	2751	379	68	62	186	17	45	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	1/0	c0002	2751	25	18	5	0	1	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	c0003	2751	3	3	0	0	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	c0004	2751	3	0	0	3	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	c0005	2751	2	2	0	0	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	c0006	2751	2	0	2	0	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	c0007	2751	2	0	2	0	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	c0008	2751	2	0	0	2	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	c0009	2751	2	2	0	0	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	c0010	2751	1	0	0	1	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	c0011	2751	1	0	1	0	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	c0012	2751	1	0	1	0	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	c0013	2751	1	1	0	0	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	c0014	2751	1	1	0	0	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	c0015	2751	1	1	0	0	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	c0016	2751	1	0	1	0	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	c0017	2751	1	0	0	0	0	1	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	c0018	2751	1	1	0	0	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEFM_chr8_24908761_24924093	0/0	c0019	2751	1	1	0	0	0	0	copy fasta	NEFM	chr8	24908761	24924093
NEGR1_chr1_71390943_72287539	0/0	c0001	1065	46	29	13	2	2	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	c0002	1065	9	8	1	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	c0003	1065	5	4	1	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	c0004	1065	1	1	0	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	c0005	1065	1	1	0	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	c0006	1065	1	1	0	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEGR1_chr1_71390943_72287539	0/0	c0007	1065	1	0	1	0	0	0	copy fasta	NEGR1	chr1	71390943	72287539
NEIL1_chr15_75342039_75362115	1/1	c0001	1173	385	77	70	187	15	34	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	c0002	1173	3	2	1	0	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	c0003	1173	2	2	0	0	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	c0004	1173	2	0	2	0	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	c0005	1173	1	0	0	1	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	c0006	1173	1	1	0	0	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	c0007	1173	1	0	0	0	1	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL1_chr15_75342039_75362115	0/0	c0008	1173	1	0	1	0	0	0	copy fasta	NEIL1	chr15	75342039	75362115
NEIL2_chr8_11764710_11792345	1/0	c0001	999	296	48	70	129	13	35	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/1	c0002	999	53	26	13	3	1	9	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	c0003	999	44	0	0	44	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	c0004	999	17	6	0	11	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	c0005	999	7	1	0	3	0	3	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	c0006	999	6	6	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	c0007	999	5	0	0	5	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	c0008	999	3	0	0	3	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	c0009	999	2	2	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	c0010	999	2	2	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	c0011	999	1	0	0	1	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	c0012	999	1	0	0	0	0	1	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	c0013	999	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345