JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NEIL2_chr8_11764710_11792345	0/0	c0014	999	1	0	0	1	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	c0015	999	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	c0016	999	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	c0017	999	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	c0018	999	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	c0019	999	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	c0020	999	1	0	1	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL2_chr8_11764710_11792345	0/0	c0021	999	1	1	0	0	0	0	copy fasta	NEIL2	chr8	11764710	11792345
NEIL3_chr4_177304874_177367936	0/0	c0001	1818	109	15	16	64	2	12	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0002	1818	94	11	29	37	6	11	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0003	1818	23	0	2	17	1	3	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0004	1818	22	0	4	10	3	5	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0005	1818	13	2	3	6	1	1	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0006	1818	12	12	0	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0007	1818	10	0	2	7	0	1	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0008	1818	8	2	1	4	0	1	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0009	1818	8	0	0	8	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0010	1818	8	3	5	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0011	1818	8	1	0	6	0	1	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	1/0	c0012	1818	7	1	3	2	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0013	1818	7	6	1	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0014	1818	7	7	0	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0015	1818	6	0	0	6	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0016	1818	6	0	0	2	0	4	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0017	1818	5	0	1	2	0	2	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0018	1818	5	0	2	2	0	1	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0019	1818	5	2	0	0	0	3	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0020	1818	4	3	1	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/1	c0021	1818	3	0	2	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0022	1818	3	2	0	0	0	1	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0023	1818	3	2	1	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0024	1818	3	2	1	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0025	1818	2	2	0	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0026	1818	2	2	0	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0027	1818	2	0	0	2	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0028	1818	2	2	0	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0029	1818	1	0	0	1	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0030	1818	1	0	0	1	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0031	1818	1	0	0	1	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0032	1818	1	1	0	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0033	1818	1	1	0	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0034	1818	1	0	0	0	0	1	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0035	1818	1	0	0	1	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0036	1818	1	0	0	1	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0037	1818	1	0	0	0	1	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0038	1818	1	1	0	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0039	1818	1	0	0	0	0	1	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0040	1818	1	0	0	1	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0041	1818	1	0	0	1	0	0	copy fasta	NEIL3	chr4	177304874	177367936
NEIL3_chr4_177304874_177367936	0/0	c0042	1818	1	0	1	0	0	0	copy fasta	NEIL3	chr4	177304874	177367936